Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22930 and BWI76_RS22935 are separated by 1 nucleotides BWI76_RS22935 and BWI76_RS22940 are separated by 57 nucleotides BWI76_RS22940 and BWI76_RS22945 are separated by 61 nucleotides
BWI76_RS22930: BWI76_RS22930 - L-fuculokinase (EC 2.7.1.51) (from data) , at 4,788,541 to 4,789,959
_RS22930
BWI76_RS22935: BWI76_RS22935 - L-fucose mutarotase, at 4,789,961 to 4,790,383
_RS22935
BWI76_RS22940: BWI76_RS22940 - DNA-binding transcriptional activator FucR, at 4,790,441 to 4,791,151
_RS22940
BWI76_RS22945: BWI76_RS22945 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 4,791,213 to 4,792,313
_RS22945
Position (kb)
4789
4790
4791 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4789.289 kb on - strand, within BWI76_RS22930 at 4789.302 kb on + strand, within BWI76_RS22930 at 4789.490 kb on - strand, within BWI76_RS22930 at 4789.680 kb on + strand, within BWI76_RS22930 at 4789.944 kb on + strand at 4790.064 kb on - strand, within BWI76_RS22935 at 4790.311 kb on - strand, within BWI76_RS22935 at 4790.564 kb on + strand, within BWI76_RS22940 at 4790.920 kb on + strand, within BWI76_RS22940 at 4790.971 kb on - strand, within BWI76_RS22940 at 4791.258 kb on + strand at 4791.324 kb on - strand, within BWI76_RS22945
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,789,289 - BWI76_RS22930 0.53 +0.3 4,789,302 + BWI76_RS22930 0.54 -1.7 4,789,490 - BWI76_RS22930 0.67 +0.6 4,789,680 + BWI76_RS22930 0.80 -0.1 4,789,944 + +0.0 4,790,064 - BWI76_RS22935 0.24 -0.7 4,790,311 - BWI76_RS22935 0.83 -2.8 4,790,564 + BWI76_RS22940 0.17 -0.2 4,790,920 + BWI76_RS22940 0.67 +0.4 4,790,971 - BWI76_RS22940 0.75 -1.8 4,791,258 + +0.5 4,791,324 - BWI76_RS22945 0.10 +0.2
Or see this region's nucleotide sequence