Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21465 and BWI76_RS21470 overlap by 4 nucleotides BWI76_RS21470 and BWI76_RS21475 are separated by 68 nucleotides BWI76_RS21475 and BWI76_RS21480 are separated by 9 nucleotides
BWI76_RS21465: BWI76_RS21465 - bifunctional chorismate mutase/prephenate dehydratase, at 4,496,591 to 4,497,751
_RS21465
BWI76_RS21470: BWI76_RS21470 - gluconolaconase, at 4,497,748 to 4,498,620
_RS21470
BWI76_RS21475: BWI76_RS21475 - bifunctional chorismate mutase/prephenate dehydrogenase, at 4,498,689 to 4,499,810
_RS21475
BWI76_RS21480: BWI76_RS21480 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 4,499,820 to 4,500,890
_RS21480
Position (kb)
4498
4499
4500 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4497.709 kb on - strand at 4497.709 kb on - strand at 4497.888 kb on - strand, within BWI76_RS21470 at 4498.016 kb on + strand, within BWI76_RS21470 at 4498.440 kb on + strand, within BWI76_RS21470 at 4498.521 kb on + strand, within BWI76_RS21470 at 4498.563 kb on + strand at 4498.730 kb on - strand at 4498.908 kb on - strand, within BWI76_RS21475 at 4499.099 kb on - strand, within BWI76_RS21475 at 4499.118 kb on - strand, within BWI76_RS21475 at 4499.220 kb on + strand, within BWI76_RS21475 at 4499.591 kb on - strand, within BWI76_RS21475 at 4499.687 kb on + strand, within BWI76_RS21475 at 4499.758 kb on + strand at 4499.958 kb on + strand, within BWI76_RS21480 at 4499.968 kb on - strand, within BWI76_RS21480 at 4500.016 kb on + strand, within BWI76_RS21480 at 4500.016 kb on + strand, within BWI76_RS21480 at 4500.024 kb on - strand, within BWI76_RS21480 at 4500.221 kb on - strand, within BWI76_RS21480 at 4500.384 kb on - strand, within BWI76_RS21480 at 4500.440 kb on - strand, within BWI76_RS21480 at 4500.481 kb on + strand, within BWI76_RS21480 at 4500.584 kb on + strand, within BWI76_RS21480 at 4500.623 kb on + strand, within BWI76_RS21480 at 4500.631 kb on - strand, within BWI76_RS21480 at 4500.634 kb on + strand, within BWI76_RS21480 at 4500.641 kb on + strand, within BWI76_RS21480
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,497,709 - -0.1 4,497,709 - -0.9 4,497,888 - BWI76_RS21470 0.16 +0.6 4,498,016 + BWI76_RS21470 0.31 +0.5 4,498,440 + BWI76_RS21470 0.79 -0.7 4,498,521 + BWI76_RS21470 0.89 -0.0 4,498,563 + -1.0 4,498,730 - -1.0 4,498,908 - BWI76_RS21475 0.20 -2.9 4,499,099 - BWI76_RS21475 0.37 -0.0 4,499,118 - BWI76_RS21475 0.38 -4.5 4,499,220 + BWI76_RS21475 0.47 -1.0 4,499,591 - BWI76_RS21475 0.80 -0.0 4,499,687 + BWI76_RS21475 0.89 -0.0 4,499,758 + +1.0 4,499,958 + BWI76_RS21480 0.13 -3.0 4,499,968 - BWI76_RS21480 0.14 +1.0 4,500,016 + BWI76_RS21480 0.18 -2.2 4,500,016 + BWI76_RS21480 0.18 -1.4 4,500,024 - BWI76_RS21480 0.19 -0.5 4,500,221 - BWI76_RS21480 0.37 -0.4 4,500,384 - BWI76_RS21480 0.53 -0.7 4,500,440 - BWI76_RS21480 0.58 -1.2 4,500,481 + BWI76_RS21480 0.62 -1.5 4,500,584 + BWI76_RS21480 0.71 -0.6 4,500,623 + BWI76_RS21480 0.75 -1.8 4,500,631 - BWI76_RS21480 0.76 +0.1 4,500,634 + BWI76_RS21480 0.76 +0.1 4,500,641 + BWI76_RS21480 0.77 -1.0
Or see this region's nucleotide sequence