Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21185

Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS21180 and BWI76_RS21185 overlap by 10 nucleotidesBWI76_RS21185 and BWI76_RS21190 are separated by 124 nucleotides BWI76_RS21180: BWI76_RS21180 - nickel transporter, at 4,433,883 to 4,434,863 _RS21180 BWI76_RS21185: BWI76_RS21185 - hypothetical protein, at 4,434,854 to 4,435,492 _RS21185 BWI76_RS21190: BWI76_RS21190 - stationary phase inducible protein CsiE, at 4,435,617 to 4,436,894 _RS21190 Position (kb) 4434 4435 4436Strain fitness (log2 ratio) -1 0 1at 4434.142 kb on + strand, within BWI76_RS21180at 4434.207 kb on + strand, within BWI76_RS21180at 4434.213 kb on - strand, within BWI76_RS21180at 4434.461 kb on + strand, within BWI76_RS21180at 4434.484 kb on - strand, within BWI76_RS21180at 4434.484 kb on - strand, within BWI76_RS21180at 4434.509 kb on - strand, within BWI76_RS21180at 4434.588 kb on + strand, within BWI76_RS21180at 4434.706 kb on - strand, within BWI76_RS21180at 4434.898 kb on + strandat 4435.053 kb on + strand, within BWI76_RS21185at 4435.066 kb on + strand, within BWI76_RS21185at 4435.126 kb on + strand, within BWI76_RS21185at 4435.134 kb on - strand, within BWI76_RS21185at 4435.141 kb on - strand, within BWI76_RS21185at 4435.311 kb on + strand, within BWI76_RS21185at 4435.329 kb on - strand, within BWI76_RS21185at 4435.493 kb on - strandat 4435.677 kb on + strandat 4435.747 kb on - strand, within BWI76_RS21190at 4435.758 kb on + strand, within BWI76_RS21190at 4436.107 kb on + strand, within BWI76_RS21190at 4436.115 kb on - strand, within BWI76_RS21190at 4436.115 kb on - strand, within BWI76_RS21190at 4436.127 kb on - strand, within BWI76_RS21190at 4436.410 kb on - strand, within BWI76_RS21190at 4436.410 kb on - strand, within BWI76_RS21190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
remove
4,434,142 + BWI76_RS21180 0.26 +0.6
4,434,207 + BWI76_RS21180 0.33 +0.4
4,434,213 - BWI76_RS21180 0.34 +0.1
4,434,461 + BWI76_RS21180 0.59 +0.4
4,434,484 - BWI76_RS21180 0.61 +0.3
4,434,484 - BWI76_RS21180 0.61 -0.8
4,434,509 - BWI76_RS21180 0.64 +0.4
4,434,588 + BWI76_RS21180 0.72 -1.6
4,434,706 - BWI76_RS21180 0.84 +0.2
4,434,898 + -0.6
4,435,053 + BWI76_RS21185 0.31 +0.8
4,435,066 + BWI76_RS21185 0.33 +0.2
4,435,126 + BWI76_RS21185 0.43 +1.7
4,435,134 - BWI76_RS21185 0.44 +0.6
4,435,141 - BWI76_RS21185 0.45 -1.6
4,435,311 + BWI76_RS21185 0.72 -0.0
4,435,329 - BWI76_RS21185 0.74 +0.8
4,435,493 - +0.6
4,435,677 + +0.0
4,435,747 - BWI76_RS21190 0.10 -0.1
4,435,758 + BWI76_RS21190 0.11 +1.6
4,436,107 + BWI76_RS21190 0.38 +0.2
4,436,115 - BWI76_RS21190 0.39 -0.5
4,436,115 - BWI76_RS21190 0.39 +0.4
4,436,127 - BWI76_RS21190 0.40 +0.3
4,436,410 - BWI76_RS21190 0.62 +0.8
4,436,410 - BWI76_RS21190 0.62 +0.2

Or see this region's nucleotide sequence