Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17755 and BWI76_RS17760 are separated by 118 nucleotides BWI76_RS17760 and BWI76_RS17765 are separated by 8 nucleotides BWI76_RS17765 and BWI76_RS17770 are separated by 94 nucleotides BWI76_RS17770 and BWI76_RS17775 are separated by 16 nucleotides
BWI76_RS17755: BWI76_RS17755 - disulfide bond formation protein B, at 3,693,429 to 3,693,959
_RS17755
BWI76_RS17760: BWI76_RS17760 - hypothetical protein, at 3,694,078 to 3,694,422
_RS17760
BWI76_RS17765: BWI76_RS17765 - hypothetical protein, at 3,694,431 to 3,694,877
_RS17765
BWI76_RS17770: BWI76_RS17770 - isomerase/hydrolase, at 3,694,972 to 3,695,631
_RS17770
BWI76_RS17775: BWI76_RS17775 - hypothetical protein, at 3,695,648 to 3,695,929
_RS17775
Position (kb) 3694
3695 Strain fitness (log2 ratio) -1
0
1 at 3693.451 kb on + strand at 3693.898 kb on + strand, within BWI76_RS17755 at 3694.273 kb on + strand, within BWI76_RS17760 at 3694.333 kb on - strand, within BWI76_RS17760 at 3694.611 kb on - strand, within BWI76_RS17765 at 3694.655 kb on - strand, within BWI76_RS17765 at 3694.948 kb on + strand at 3694.977 kb on + strand at 3695.186 kb on - strand, within BWI76_RS17770 at 3695.420 kb on + strand, within BWI76_RS17770 at 3695.614 kb on + strand at 3695.614 kb on + strand at 3695.614 kb on + strand at 3695.646 kb on - strand at 3695.668 kb on + strand at 3695.721 kb on + strand, within BWI76_RS17775 at 3695.821 kb on + strand, within BWI76_RS17775
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,693,451 + +0.7 3,693,898 + BWI76_RS17755 0.88 -1.2 3,694,273 + BWI76_RS17760 0.57 +0.6 3,694,333 - BWI76_RS17760 0.74 -0.4 3,694,611 - BWI76_RS17765 0.40 +0.6 3,694,655 - BWI76_RS17765 0.50 +0.6 3,694,948 + +0.2 3,694,977 + -0.1 3,695,186 - BWI76_RS17770 0.32 +0.7 3,695,420 + BWI76_RS17770 0.68 +1.0 3,695,614 + -0.4 3,695,614 + -0.3 3,695,614 + -0.0 3,695,646 - -0.0 3,695,668 + +0.1 3,695,721 + BWI76_RS17775 0.26 +0.5 3,695,821 + BWI76_RS17775 0.61 -0.4
Or see this region's nucleotide sequence