Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17370 and BWI76_RS17375 are separated by 10 nucleotides BWI76_RS17375 and BWI76_RS17380 are separated by 1 nucleotides BWI76_RS17380 and BWI76_RS17385 are separated by 248 nucleotides
BWI76_RS17370: BWI76_RS17370 - nitrate transporter NasD, at 3,604,746 to 3,605,534
_RS17370
BWI76_RS17375: BWI76_RS17375 - nitrate ABC transporter, permease protein, at 3,605,545 to 3,606,429
_RS17375
BWI76_RS17380: BWI76_RS17380 - nitrate transporter component, at 3,606,431 to 3,607,687
_RS17380
BWI76_RS17385: BWI76_RS17385 - nitrate regulatory protein, at 3,607,936 to 3,609,126
_RS17385
Position (kb)
3606
3607
3608 Strain fitness (log2 ratio)
-1
0
1 at 3605.452 kb on - strand, within BWI76_RS17370 at 3605.877 kb on + strand, within BWI76_RS17375 at 3606.323 kb on - strand, within BWI76_RS17375 at 3606.793 kb on + strand, within BWI76_RS17380 at 3607.015 kb on + strand, within BWI76_RS17380 at 3607.519 kb on - strand, within BWI76_RS17380 at 3607.567 kb on - strand at 3607.690 kb on - strand at 3607.735 kb on - strand at 3607.747 kb on + strand at 3607.869 kb on + strand at 3607.973 kb on - strand at 3608.084 kb on + strand, within BWI76_RS17385 at 3608.152 kb on - strand, within BWI76_RS17385 at 3608.211 kb on + strand, within BWI76_RS17385 at 3608.219 kb on - strand, within BWI76_RS17385 at 3608.219 kb on - strand, within BWI76_RS17385 at 3608.221 kb on - strand, within BWI76_RS17385 at 3608.288 kb on + strand, within BWI76_RS17385
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,605,452 - BWI76_RS17370 0.89 -1.3 3,605,877 + BWI76_RS17375 0.38 -0.1 3,606,323 - BWI76_RS17375 0.88 -0.4 3,606,793 + BWI76_RS17380 0.29 +1.0 3,607,015 + BWI76_RS17380 0.46 +0.3 3,607,519 - BWI76_RS17380 0.87 +0.6 3,607,567 - -0.6 3,607,690 - +0.5 3,607,735 - +0.5 3,607,747 + -0.1 3,607,869 + -0.1 3,607,973 - +1.0 3,608,084 + BWI76_RS17385 0.12 +1.1 3,608,152 - BWI76_RS17385 0.18 -1.2 3,608,211 + BWI76_RS17385 0.23 +0.4 3,608,219 - BWI76_RS17385 0.24 -0.3 3,608,219 - BWI76_RS17385 0.24 -0.3 3,608,221 - BWI76_RS17385 0.24 +0.2 3,608,288 + BWI76_RS17385 0.30 -0.7
Or see this region's nucleotide sequence