Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16790 and BWI76_RS16795 are separated by 100 nucleotides BWI76_RS16795 and BWI76_RS16800 overlap by 14 nucleotides BWI76_RS16800 and BWI76_RS16805 are separated by 65 nucleotides
BWI76_RS16790: BWI76_RS16790 - MFS transporter, at 3,481,340 to 3,482,545
_RS16790
BWI76_RS16795: BWI76_RS16795 - amino acid ABC transporter ATPase, at 3,482,646 to 3,483,368
_RS16795
BWI76_RS16800: BWI76_RS16800 - amino acid ABC transporter permease, at 3,483,355 to 3,484,119
_RS16800
BWI76_RS16805: BWI76_RS16805 - basic amino acid ABC transporter substrate-binding protein, at 3,484,185 to 3,484,952
_RS16805
Position (kb)
3482
3483
3484 Strain fitness (log2 ratio)
-2
-1
0
1 at 3481.739 kb on + strand, within BWI76_RS16790 at 3482.057 kb on - strand, within BWI76_RS16790 at 3482.057 kb on - strand, within BWI76_RS16790 at 3482.144 kb on + strand, within BWI76_RS16790 at 3482.144 kb on + strand, within BWI76_RS16790 at 3482.144 kb on + strand, within BWI76_RS16790 at 3482.258 kb on + strand, within BWI76_RS16790 at 3482.537 kb on + strand at 3482.553 kb on - strand at 3482.718 kb on - strand at 3482.878 kb on - strand, within BWI76_RS16795 at 3482.894 kb on + strand, within BWI76_RS16795 at 3483.505 kb on - strand, within BWI76_RS16800 at 3484.146 kb on + strand at 3484.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,481,739 + BWI76_RS16790 0.33 +0.6 3,482,057 - BWI76_RS16790 0.59 +0.4 3,482,057 - BWI76_RS16790 0.59 -0.6 3,482,144 + BWI76_RS16790 0.67 +0.4 3,482,144 + BWI76_RS16790 0.67 -0.6 3,482,144 + BWI76_RS16790 0.67 -1.5 3,482,258 + BWI76_RS16790 0.76 +1.1 3,482,537 + +0.7 3,482,553 - -1.0 3,482,718 - +1.7 3,482,878 - BWI76_RS16795 0.32 +1.4 3,482,894 + BWI76_RS16795 0.34 +0.6 3,483,505 - BWI76_RS16800 0.20 +0.0 3,484,146 + -1.9 3,484,161 + -1.3
Or see this region's nucleotide sequence