Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16685 and BWI76_RS16690 overlap by 1 nucleotides BWI76_RS16690 and BWI76_RS16695 overlap by 4 nucleotides BWI76_RS16695 and BWI76_RS16700 overlap by 4 nucleotides
BWI76_RS16685: BWI76_RS16685 - peptide ABC transporter permease, at 3,453,642 to 3,454,601
_RS16685
BWI76_RS16690: BWI76_RS16690 - peptide ABC transporter permease, at 3,454,601 to 3,455,548
_RS16690
BWI76_RS16695: BWI76_RS16695 - dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein, at 3,455,545 to 3,456,525
_RS16695
BWI76_RS16700: BWI76_RS16700 - ABC transporter ATP-binding protein, at 3,456,522 to 3,457,487
_RS16700
Position (kb)
3455
3456
3457 Strain fitness (log2 ratio)
-1
0
1 at 3454.628 kb on - strand at 3454.952 kb on - strand, within BWI76_RS16690 at 3455.202 kb on + strand, within BWI76_RS16690 at 3455.311 kb on + strand, within BWI76_RS16690 at 3455.667 kb on - strand, within BWI76_RS16695 at 3455.711 kb on - strand, within BWI76_RS16695 at 3455.942 kb on + strand at 3455.950 kb on - strand, within BWI76_RS16695 at 3456.156 kb on + strand, within BWI76_RS16695 at 3456.200 kb on - strand, within BWI76_RS16695 at 3456.226 kb on + strand, within BWI76_RS16695 at 3456.433 kb on + strand at 3456.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,454,628 - +0.2 3,454,952 - BWI76_RS16690 0.37 -0.5 3,455,202 + BWI76_RS16690 0.63 -0.6 3,455,311 + BWI76_RS16690 0.75 +0.1 3,455,667 - BWI76_RS16695 0.12 +0.6 3,455,711 - BWI76_RS16695 0.17 +1.1 3,455,942 + -1.6 3,455,950 - BWI76_RS16695 0.41 +0.1 3,456,156 + BWI76_RS16695 0.62 +0.3 3,456,200 - BWI76_RS16695 0.67 +0.6 3,456,226 + BWI76_RS16695 0.69 +0.8 3,456,433 + +0.6 3,456,441 - -0.4
Or see this region's nucleotide sequence