Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15940

Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15930 and BWI76_RS15935 are separated by 1 nucleotidesBWI76_RS15935 and BWI76_RS15940 are separated by 41 nucleotidesBWI76_RS15940 and BWI76_RS15945 are separated by 139 nucleotides BWI76_RS15930: BWI76_RS15930 - dimethylsulfoxide reductase, chain B, at 3,304,705 to 3,305,322 _RS15930 BWI76_RS15935: BWI76_RS15935 - dimethyl sulfoxide reductase, at 3,305,324 to 3,306,181 _RS15935 BWI76_RS15940: BWI76_RS15940 - DMSO reductase maturation protein DsmD, at 3,306,223 to 3,306,831 _RS15940 BWI76_RS15945: BWI76_RS15945 - voltage-gated ClC-type chloride channel ClcB, at 3,306,971 to 3,308,266 _RS15945 Position (kb) 3306 3307Strain fitness (log2 ratio) -1 0 1at 3305.723 kb on + strand, within BWI76_RS15935at 3306.388 kb on + strand, within BWI76_RS15940at 3306.753 kb on - strand, within BWI76_RS15940at 3306.795 kb on + strandat 3306.809 kb on + strandat 3306.832 kb on + strandat 3307.119 kb on + strand, within BWI76_RS15945at 3307.760 kb on - strand, within BWI76_RS15945

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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3,305,723 + BWI76_RS15935 0.47 -1.1
3,306,388 + BWI76_RS15940 0.27 +1.6
3,306,753 - BWI76_RS15940 0.87 +0.5
3,306,795 + +0.4
3,306,809 + +0.4
3,306,832 + +0.1
3,307,119 + BWI76_RS15945 0.11 +0.6
3,307,760 - BWI76_RS15945 0.61 +0.4

Or see this region's nucleotide sequence