Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13195 and BWI76_RS13200 overlap by 26 nucleotides BWI76_RS13200 and BWI76_RS13205 are separated by 202 nucleotides BWI76_RS13205 and BWI76_RS13210 are separated by 276 nucleotides
BWI76_RS13195: BWI76_RS13195 - glutamate dehydrogenase, at 2,753,748 to 2,755,022
_RS13195
BWI76_RS13200: BWI76_RS13200 - hypothetical protein, at 2,754,997 to 2,755,230
_RS13200
BWI76_RS13205: BWI76_RS13205 - hypothetical protein, at 2,755,433 to 2,756,224
_RS13205
BWI76_RS13210: BWI76_RS13210 - aldehyde dehydrogenase, at 2,756,501 to 2,757,940
_RS13210
Position (kb)
2755
2756
2757 Strain fitness (log2 ratio)
-1
0
1
2 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.074 kb on + strand, within BWI76_RS13200 at 2755.075 kb on + strand, within BWI76_RS13200 at 2755.082 kb on - strand, within BWI76_RS13200 at 2755.082 kb on - strand, within BWI76_RS13200 at 2755.407 kb on + strand at 2755.662 kb on + strand, within BWI76_RS13205 at 2755.757 kb on + strand, within BWI76_RS13205 at 2755.899 kb on - strand, within BWI76_RS13205 at 2755.915 kb on - strand, within BWI76_RS13205 at 2755.951 kb on + strand, within BWI76_RS13205 at 2756.542 kb on + strand at 2756.794 kb on + strand, within BWI76_RS13210 at 2756.905 kb on - strand, within BWI76_RS13210
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,755,074 + BWI76_RS13200 0.33 +1.7 2,755,074 + BWI76_RS13200 0.33 -0.6 2,755,074 + BWI76_RS13200 0.33 +0.7 2,755,074 + BWI76_RS13200 0.33 +1.1 2,755,074 + BWI76_RS13200 0.33 -0.0 2,755,074 + BWI76_RS13200 0.33 -0.2 2,755,074 + BWI76_RS13200 0.33 +1.2 2,755,075 + BWI76_RS13200 0.33 +2.5 2,755,082 - BWI76_RS13200 0.36 +0.4 2,755,082 - BWI76_RS13200 0.36 +1.0 2,755,407 + +0.4 2,755,662 + BWI76_RS13205 0.29 +0.7 2,755,757 + BWI76_RS13205 0.41 +0.4 2,755,899 - BWI76_RS13205 0.59 +0.3 2,755,915 - BWI76_RS13205 0.61 +1.1 2,755,951 + BWI76_RS13205 0.65 +1.2 2,756,542 + -0.2 2,756,794 + BWI76_RS13210 0.20 -0.2 2,756,905 - BWI76_RS13210 0.28 -0.3
Or see this region's nucleotide sequence