Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13160

Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13150 and BWI76_RS13155 are separated by 11 nucleotidesBWI76_RS13155 and BWI76_RS13160 are separated by 35 nucleotidesBWI76_RS13160 and BWI76_RS13165 are separated by 204 nucleotides BWI76_RS13150: BWI76_RS13150 - carnitine operon protein CaiE, at 2,742,519 to 2,743,115 _RS13150 BWI76_RS13155: BWI76_RS13155 - hypothetical protein, at 2,743,127 to 2,743,534 _RS13155 BWI76_RS13160: BWI76_RS13160 - azoreductase, at 2,743,570 to 2,744,175 _RS13160 BWI76_RS13165: BWI76_RS13165 - ATP-dependent RNA helicase HrpA, at 2,744,380 to 2,748,282 _RS13165 Position (kb) 2743 2744 2745Strain fitness (log2 ratio) -1 0 1at 2742.728 kb on + strand, within BWI76_RS13150at 2743.184 kb on - strand, within BWI76_RS13155at 2743.203 kb on - strand, within BWI76_RS13155at 2743.294 kb on + strand, within BWI76_RS13155at 2743.302 kb on - strand, within BWI76_RS13155at 2743.707 kb on + strand, within BWI76_RS13160at 2744.165 kb on + strandat 2744.220 kb on - strandat 2744.892 kb on + strand, within BWI76_RS13165at 2745.143 kb on - strand, within BWI76_RS13165

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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2,742,728 + BWI76_RS13150 0.35 +0.1
2,743,184 - BWI76_RS13155 0.14 -0.7
2,743,203 - BWI76_RS13155 0.19 +1.3
2,743,294 + BWI76_RS13155 0.41 +0.9
2,743,302 - BWI76_RS13155 0.43 +0.1
2,743,707 + BWI76_RS13160 0.23 -1.4
2,744,165 + +0.3
2,744,220 - +0.1
2,744,892 + BWI76_RS13165 0.13 +0.9
2,745,143 - BWI76_RS13165 0.20 -0.1

Or see this region's nucleotide sequence