Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08900

Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08895 and BWI76_RS08900 are separated by 49 nucleotidesBWI76_RS08900 and BWI76_RS08905 are separated by 13 nucleotidesBWI76_RS08905 and BWI76_RS08910 overlap by 1 nucleotides BWI76_RS08895: BWI76_RS08895 - MFS transporter, at 1,872,721 to 1,874,052 _RS08895 BWI76_RS08900: BWI76_RS08900 - putative short-chain dehydrogenase/reductase SDR, at 1,874,102 to 1,874,851 _RS08900 BWI76_RS08905: BWI76_RS08905 - transketolase, at 1,874,865 to 1,875,710 _RS08905 BWI76_RS08910: BWI76_RS08910 - transketolase domain-containing protein, at 1,875,710 to 1,876,702 _RS08910 Position (kb) 1874 1875Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1873.102 kb on + strand, within BWI76_RS08895at 1873.103 kb on + strand, within BWI76_RS08895at 1873.174 kb on + strand, within BWI76_RS08895at 1873.230 kb on - strand, within BWI76_RS08895at 1873.235 kb on - strand, within BWI76_RS08895at 1873.254 kb on - strand, within BWI76_RS08895at 1873.254 kb on - strand, within BWI76_RS08895at 1873.297 kb on - strand, within BWI76_RS08895at 1873.308 kb on + strand, within BWI76_RS08895at 1873.308 kb on + strand, within BWI76_RS08895at 1873.308 kb on + strand, within BWI76_RS08895at 1873.310 kb on - strand, within BWI76_RS08895at 1873.313 kb on + strand, within BWI76_RS08895at 1873.315 kb on + strand, within BWI76_RS08895at 1873.315 kb on + strand, within BWI76_RS08895at 1873.315 kb on - strand, within BWI76_RS08895at 1873.315 kb on - strand, within BWI76_RS08895at 1873.316 kb on - strand, within BWI76_RS08895at 1873.316 kb on - strand, within BWI76_RS08895at 1873.321 kb on - strand, within BWI76_RS08895at 1873.346 kb on + strand, within BWI76_RS08895at 1873.354 kb on - strand, within BWI76_RS08895at 1873.354 kb on - strand, within BWI76_RS08895at 1873.356 kb on + strand, within BWI76_RS08895at 1873.356 kb on + strandat 1873.356 kb on + strand, within BWI76_RS08895at 1873.356 kb on + strand, within BWI76_RS08895at 1873.356 kb on + strand, within BWI76_RS08895at 1873.356 kb on + strand, within BWI76_RS08895at 1873.356 kb on + strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.364 kb on - strand, within BWI76_RS08895at 1873.454 kb on + strand, within BWI76_RS08895at 1873.592 kb on + strand, within BWI76_RS08895at 1873.597 kb on + strand, within BWI76_RS08895at 1873.605 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.606 kb on + strand, within BWI76_RS08895at 1873.607 kb on + strand, within BWI76_RS08895at 1873.614 kb on - strand, within BWI76_RS08895at 1873.614 kb on - strand, within BWI76_RS08895at 1873.624 kb on + strand, within BWI76_RS08895at 1873.624 kb on + strand, within BWI76_RS08895at 1873.683 kb on + strand, within BWI76_RS08895at 1873.684 kb on + strand, within BWI76_RS08895at 1873.684 kb on + strand, within BWI76_RS08895at 1873.684 kb on + strand, within BWI76_RS08895at 1873.684 kb on + strand, within BWI76_RS08895at 1873.684 kb on + strand, within BWI76_RS08895at 1873.684 kb on + strand, within BWI76_RS08895at 1873.692 kb on - strand, within BWI76_RS08895at 1873.698 kb on + strand, within BWI76_RS08895at 1873.773 kb on + strand, within BWI76_RS08895at 1873.773 kb on + strand, within BWI76_RS08895at 1873.773 kb on + strand, within BWI76_RS08895at 1873.773 kb on + strand, within BWI76_RS08895at 1873.775 kb on + strand, within BWI76_RS08895at 1873.787 kb on + strand, within BWI76_RS08895at 1873.787 kb on + strand, within BWI76_RS08895at 1873.842 kb on - strand, within BWI76_RS08895at 1873.848 kb on + strand, within BWI76_RS08895at 1873.848 kb on + strand, within BWI76_RS08895at 1873.848 kb on + strand, within BWI76_RS08895at 1873.848 kb on + strand, within BWI76_RS08895at 1873.851 kb on - strand, within BWI76_RS08895at 1873.852 kb on - strandat 1873.856 kb on - strand, within BWI76_RS08895at 1873.856 kb on - strand, within BWI76_RS08895at 1873.856 kb on - strand, within BWI76_RS08895at 1873.856 kb on - strand, within BWI76_RS08895at 1873.856 kb on - strand, within BWI76_RS08895at 1873.856 kb on - strand, within BWI76_RS08895at 1873.856 kb on - strand, within BWI76_RS08895at 1873.932 kb on + strandat 1873.940 kb on - strandat 1873.940 kb on - strandat 1873.970 kb on + strandat 1873.970 kb on + strandat 1874.008 kb on + strandat 1874.014 kb on + strandat 1874.015 kb on + strandat 1874.015 kb on + strandat 1874.015 kb on + strandat 1874.015 kb on + strandat 1874.015 kb on + strandat 1874.022 kb on - strandat 1874.022 kb on - strandat 1874.023 kb on - strandat 1874.023 kb on - strandat 1874.042 kb on + strandat 1874.141 kb on + strandat 1874.144 kb on - strandat 1874.149 kb on - strandat 1874.152 kb on + strandat 1874.152 kb on + strandat 1874.154 kb on + strandat 1874.162 kb on - strandat 1874.208 kb on + strand, within BWI76_RS08900at 1874.208 kb on + strand, within BWI76_RS08900at 1874.208 kb on + strand, within BWI76_RS08900at 1874.208 kb on + strand, within BWI76_RS08900at 1874.216 kb on - strand, within BWI76_RS08900at 1874.216 kb on - strand, within BWI76_RS08900at 1874.216 kb on - strand, within BWI76_RS08900at 1874.218 kb on + strand, within BWI76_RS08900at 1874.223 kb on - strand, within BWI76_RS08900at 1874.243 kb on + strand, within BWI76_RS08900at 1874.249 kb on + strand, within BWI76_RS08900at 1874.249 kb on + strand, within BWI76_RS08900at 1874.249 kb on + strand, within BWI76_RS08900at 1874.251 kb on - strand, within BWI76_RS08900at 1874.257 kb on - strand, within BWI76_RS08900at 1874.257 kb on - strand, within BWI76_RS08900at 1874.263 kb on - strand, within BWI76_RS08900at 1874.263 kb on - strand, within BWI76_RS08900at 1874.263 kb on - strand, within BWI76_RS08900at 1874.273 kb on - strand, within BWI76_RS08900at 1874.273 kb on - strand, within BWI76_RS08900at 1874.310 kb on - strand, within BWI76_RS08900at 1874.329 kb on + strand, within BWI76_RS08900at 1874.404 kb on - strand, within BWI76_RS08900at 1874.423 kb on + strand, within BWI76_RS08900at 1874.430 kb on + strand, within BWI76_RS08900at 1874.430 kb on + strand, within BWI76_RS08900at 1874.431 kb on - strand, within BWI76_RS08900at 1874.682 kb on + strand, within BWI76_RS08900at 1874.779 kb on - strandat 1874.810 kb on + strandat 1874.951 kb on + strand, within BWI76_RS08905at 1874.959 kb on - strand, within BWI76_RS08905at 1874.967 kb on + strand, within BWI76_RS08905at 1874.975 kb on - strand, within BWI76_RS08905at 1875.195 kb on - strand, within BWI76_RS08905at 1875.368 kb on - strand, within BWI76_RS08905at 1875.447 kb on - strand, within BWI76_RS08905at 1875.468 kb on + strand, within BWI76_RS08905at 1875.590 kb on + strand, within BWI76_RS08905at 1875.592 kb on + strand, within BWI76_RS08905

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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1,873,102 + BWI76_RS08895 0.29 -1.1
1,873,103 + BWI76_RS08895 0.29 +1.0
1,873,174 + BWI76_RS08895 0.34 +1.4
1,873,230 - BWI76_RS08895 0.38 -0.4
1,873,235 - BWI76_RS08895 0.39 +0.4
1,873,254 - BWI76_RS08895 0.40 +0.1
1,873,254 - BWI76_RS08895 0.40 -1.0
1,873,297 - BWI76_RS08895 0.43 +0.1
1,873,308 + BWI76_RS08895 0.44 -0.7
1,873,308 + BWI76_RS08895 0.44 +2.2
1,873,308 + BWI76_RS08895 0.44 -0.2
1,873,310 - BWI76_RS08895 0.44 +0.1
1,873,313 + BWI76_RS08895 0.44 -1.5
1,873,315 + BWI76_RS08895 0.45 +1.0
1,873,315 + BWI76_RS08895 0.45 +0.8
1,873,315 - BWI76_RS08895 0.45 +0.3
1,873,315 - BWI76_RS08895 0.45 -0.2
1,873,316 - BWI76_RS08895 0.45 -0.5
1,873,316 - BWI76_RS08895 0.45 -0.3
1,873,321 - BWI76_RS08895 0.45 +1.3
1,873,346 + BWI76_RS08895 0.47 +0.8
1,873,354 - BWI76_RS08895 0.48 +0.8
1,873,354 - BWI76_RS08895 0.48 -1.5
1,873,356 + BWI76_RS08895 0.48 +0.8
1,873,356 + -0.2
1,873,356 + BWI76_RS08895 0.48 +0.8
1,873,356 + BWI76_RS08895 0.48 -0.0
1,873,356 + BWI76_RS08895 0.48 +0.8
1,873,356 + BWI76_RS08895 0.48 +0.8
1,873,356 + BWI76_RS08895 0.48 +0.0
1,873,364 - BWI76_RS08895 0.48 -0.7
1,873,364 - BWI76_RS08895 0.48 -1.7
1,873,364 - BWI76_RS08895 0.48 -0.5
1,873,364 - BWI76_RS08895 0.48 +0.4
1,873,364 - BWI76_RS08895 0.48 +1.4
1,873,364 - BWI76_RS08895 0.48 -0.1
1,873,364 - BWI76_RS08895 0.48 +1.8
1,873,364 - BWI76_RS08895 0.48 +1.1
1,873,364 - BWI76_RS08895 0.48 +0.7
1,873,364 - BWI76_RS08895 0.48 -0.3
1,873,364 - BWI76_RS08895 0.48 -2.6
1,873,364 - BWI76_RS08895 0.48 -0.7
1,873,364 - BWI76_RS08895 0.48 -0.7
1,873,364 - BWI76_RS08895 0.48 -0.2
1,873,364 - BWI76_RS08895 0.48 +0.8
1,873,364 - BWI76_RS08895 0.48 +0.8
1,873,364 - BWI76_RS08895 0.48 -0.8
1,873,364 - BWI76_RS08895 0.48 -0.1
1,873,364 - BWI76_RS08895 0.48 -1.0
1,873,364 - BWI76_RS08895 0.48 +0.0
1,873,364 - BWI76_RS08895 0.48 -0.3
1,873,364 - BWI76_RS08895 0.48 +0.0
1,873,364 - BWI76_RS08895 0.48 +1.0
1,873,364 - BWI76_RS08895 0.48 -0.1
1,873,364 - BWI76_RS08895 0.48 -0.2
1,873,364 - BWI76_RS08895 0.48 +0.4
1,873,364 - BWI76_RS08895 0.48 +0.4
1,873,364 - BWI76_RS08895 0.48 +0.1
1,873,364 - BWI76_RS08895 0.48 +0.0
1,873,364 - BWI76_RS08895 0.48 -0.2
1,873,364 - BWI76_RS08895 0.48 +0.4
1,873,364 - BWI76_RS08895 0.48 +1.6
1,873,364 - BWI76_RS08895 0.48 -0.2
1,873,364 - BWI76_RS08895 0.48 -0.6
1,873,364 - BWI76_RS08895 0.48 +0.1
1,873,364 - BWI76_RS08895 0.48 -0.4
1,873,454 + BWI76_RS08895 0.55 +0.8
1,873,592 + BWI76_RS08895 0.65 +0.8
1,873,597 + BWI76_RS08895 0.66 +0.4
1,873,605 + BWI76_RS08895 0.66 +0.4
1,873,606 + BWI76_RS08895 0.66 -0.2
1,873,606 + BWI76_RS08895 0.66 -1.2
1,873,606 + BWI76_RS08895 0.66 -0.7
1,873,606 + BWI76_RS08895 0.66 -1.4
1,873,606 + BWI76_RS08895 0.66 -0.5
1,873,606 + BWI76_RS08895 0.66 +1.2
1,873,606 + BWI76_RS08895 0.66 -2.2
1,873,606 + BWI76_RS08895 0.66 -1.2
1,873,606 + BWI76_RS08895 0.66 -0.2
1,873,606 + BWI76_RS08895 0.66 +0.5
1,873,606 + BWI76_RS08895 0.66 -1.4
1,873,607 + BWI76_RS08895 0.67 -0.2
1,873,614 - BWI76_RS08895 0.67 -0.2
1,873,614 - BWI76_RS08895 0.67 -2.0
1,873,624 + BWI76_RS08895 0.68 -1.7
1,873,624 + BWI76_RS08895 0.68 -0.2
1,873,683 + BWI76_RS08895 0.72 +1.8
1,873,684 + BWI76_RS08895 0.72 -2.5
1,873,684 + BWI76_RS08895 0.72 -0.6
1,873,684 + BWI76_RS08895 0.72 +0.3
1,873,684 + BWI76_RS08895 0.72 -0.7
1,873,684 + BWI76_RS08895 0.72 +0.5
1,873,684 + BWI76_RS08895 0.72 -0.2
1,873,692 - BWI76_RS08895 0.73 -1.3
1,873,698 + BWI76_RS08895 0.73 -1.2
1,873,773 + BWI76_RS08895 0.79 -0.5
1,873,773 + BWI76_RS08895 0.79 -0.6
1,873,773 + BWI76_RS08895 0.79 +0.8
1,873,773 + BWI76_RS08895 0.79 +0.0
1,873,775 + BWI76_RS08895 0.79 -2.3
1,873,787 + BWI76_RS08895 0.80 -1.0
1,873,787 + BWI76_RS08895 0.80 +0.8
1,873,842 - BWI76_RS08895 0.84 -1.7
1,873,848 + BWI76_RS08895 0.85 +0.3
1,873,848 + BWI76_RS08895 0.85 +0.8
1,873,848 + BWI76_RS08895 0.85 +1.3
1,873,848 + BWI76_RS08895 0.85 -0.7
1,873,851 - BWI76_RS08895 0.85 -0.7
1,873,852 - -1.2
1,873,856 - BWI76_RS08895 0.85 -0.7
1,873,856 - BWI76_RS08895 0.85 -1.3
1,873,856 - BWI76_RS08895 0.85 -0.2
1,873,856 - BWI76_RS08895 0.85 -0.2
1,873,856 - BWI76_RS08895 0.85 +1.1
1,873,856 - BWI76_RS08895 0.85 -0.2
1,873,856 - BWI76_RS08895 0.85 +1.3
1,873,932 + +0.5
1,873,940 - +0.8
1,873,940 - -0.5
1,873,970 + -2.6
1,873,970 + -0.2
1,874,008 + -0.7
1,874,014 + +0.1
1,874,015 + -1.4
1,874,015 + +0.3
1,874,015 + +0.8
1,874,015 + +0.7
1,874,015 + +0.2
1,874,022 - -1.7
1,874,022 - -0.5
1,874,023 - +1.6
1,874,023 - -1.7
1,874,042 + +0.8
1,874,141 + +0.1
1,874,144 - -0.2
1,874,149 - -1.0
1,874,152 + +1.1
1,874,152 + -0.7
1,874,154 + +0.3
1,874,162 - -1.2
1,874,208 + BWI76_RS08900 0.14 -0.7
1,874,208 + BWI76_RS08900 0.14 -0.6
1,874,208 + BWI76_RS08900 0.14 +0.1
1,874,208 + BWI76_RS08900 0.14 -0.7
1,874,216 - BWI76_RS08900 0.15 +0.4
1,874,216 - BWI76_RS08900 0.15 +0.1
1,874,216 - BWI76_RS08900 0.15 -1.2
1,874,218 + BWI76_RS08900 0.15 -0.4
1,874,223 - BWI76_RS08900 0.16 -1.0
1,874,243 + BWI76_RS08900 0.19 -0.9
1,874,249 + BWI76_RS08900 0.20 +0.8
1,874,249 + BWI76_RS08900 0.20 +0.1
1,874,249 + BWI76_RS08900 0.20 +0.8
1,874,251 - BWI76_RS08900 0.20 -0.3
1,874,257 - BWI76_RS08900 0.21 -0.5
1,874,257 - BWI76_RS08900 0.21 +0.2
1,874,263 - BWI76_RS08900 0.21 -0.5
1,874,263 - BWI76_RS08900 0.21 -0.2
1,874,263 - BWI76_RS08900 0.21 -1.7
1,874,273 - BWI76_RS08900 0.23 -0.4
1,874,273 - BWI76_RS08900 0.23 +1.6
1,874,310 - BWI76_RS08900 0.28 +0.0
1,874,329 + BWI76_RS08900 0.30 -3.6
1,874,404 - BWI76_RS08900 0.40 -1.5
1,874,423 + BWI76_RS08900 0.43 -0.1
1,874,430 + BWI76_RS08900 0.44 +0.0
1,874,430 + BWI76_RS08900 0.44 -0.5
1,874,431 - BWI76_RS08900 0.44 -1.2
1,874,682 + BWI76_RS08900 0.77 +0.8
1,874,779 - -0.1
1,874,810 + -2.3
1,874,951 + BWI76_RS08905 0.10 +0.7
1,874,959 - BWI76_RS08905 0.11 +1.2
1,874,967 + BWI76_RS08905 0.12 +0.8
1,874,975 - BWI76_RS08905 0.13 +0.2
1,875,195 - BWI76_RS08905 0.39 +0.2
1,875,368 - BWI76_RS08905 0.59 +0.5
1,875,447 - BWI76_RS08905 0.69 -1.0
1,875,468 + BWI76_RS08905 0.71 +1.0
1,875,590 + BWI76_RS08905 0.86 +0.9
1,875,592 + BWI76_RS08905 0.86 +0.3

Or see this region's nucleotide sequence