Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04010

Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04000 and BWI76_RS04005 are separated by 2 nucleotidesBWI76_RS04005 and BWI76_RS04010 are separated by 108 nucleotidesBWI76_RS04010 and BWI76_RS04015 overlap by 10 nucleotides BWI76_RS04000: BWI76_RS04000 - DNA replication protein DnaC, at 828,479 to 829,216 _RS04000 BWI76_RS04005: BWI76_RS04005 - primosomal protein DnaI, at 829,219 to 829,758 _RS04005 BWI76_RS04010: BWI76_RS04010 - hypothetical protein, at 829,867 to 830,340 _RS04010 BWI76_RS04015: BWI76_RS04015 - membrane protein, at 830,331 to 831,107 _RS04015 Position (kb) 829 830 831Strain fitness (log2 ratio) -2 -1 0 1 2at 829.789 kb on - strandat 829.807 kb on - strandat 829.888 kb on - strandat 829.991 kb on - strand, within BWI76_RS04010at 830.052 kb on + strand, within BWI76_RS04010at 830.106 kb on - strand, within BWI76_RS04010at 830.152 kb on - strand, within BWI76_RS04010at 830.228 kb on + strand, within BWI76_RS04010at 830.236 kb on - strand, within BWI76_RS04010at 830.297 kb on + strandat 830.297 kb on + strandat 830.305 kb on - strandat 830.305 kb on - strandat 830.383 kb on - strandat 830.566 kb on - strand, within BWI76_RS04015at 830.566 kb on - strand, within BWI76_RS04015at 830.625 kb on + strand, within BWI76_RS04015at 830.763 kb on + strand, within BWI76_RS04015at 830.778 kb on - strand, within BWI76_RS04015at 830.926 kb on - strand, within BWI76_RS04015at 830.934 kb on - strand, within BWI76_RS04015at 830.950 kb on - strand, within BWI76_RS04015at 830.973 kb on - strand, within BWI76_RS04015at 831.008 kb on + strand, within BWI76_RS04015at 831.063 kb on - strandat 831.117 kb on - strandat 831.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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829,789 - +0.3
829,807 - +0.1
829,888 - -0.3
829,991 - BWI76_RS04010 0.26 +1.4
830,052 + BWI76_RS04010 0.39 -0.1
830,106 - BWI76_RS04010 0.50 +0.8
830,152 - BWI76_RS04010 0.60 +1.0
830,228 + BWI76_RS04010 0.76 +1.3
830,236 - BWI76_RS04010 0.78 +0.7
830,297 + +0.7
830,297 + +0.8
830,305 - +0.2
830,305 - +0.4
830,383 - +0.1
830,566 - BWI76_RS04015 0.30 +0.4
830,566 - BWI76_RS04015 0.30 -0.6
830,625 + BWI76_RS04015 0.38 -0.4
830,763 + BWI76_RS04015 0.56 -0.3
830,778 - BWI76_RS04015 0.58 +1.5
830,926 - BWI76_RS04015 0.77 -0.1
830,934 - BWI76_RS04015 0.78 -1.2
830,950 - BWI76_RS04015 0.80 +2.0
830,973 - BWI76_RS04015 0.83 +0.4
831,008 + BWI76_RS04015 0.87 -2.2
831,063 - -1.5
831,117 - -1.0
831,197 - +0.9

Or see this region's nucleotide sequence