Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01325 and BWI76_RS01330 are separated by 2 nucleotides BWI76_RS01330 and BWI76_RS01335 are separated by 42 nucleotides BWI76_RS01335 and BWI76_RS01340 are separated by 6 nucleotides BWI76_RS01340 and BWI76_RS01345 are separated by 177 nucleotides
BWI76_RS01325: BWI76_RS01325 - twin-arginine translocase subunit TatB, at 271,943 to 272,482
_RS01325
BWI76_RS01330: BWI76_RS01330 - twin-arginine translocase subunit TatC, at 272,485 to 273,258
_RS01330
BWI76_RS01335: BWI76_RS01335 - DNase TatD, at 273,301 to 274,083
_RS01335
BWI76_RS01340: BWI76_RS01340 - transcription/translation regulatory transformer protein RfaH, at 274,090 to 274,578
_RS01340
BWI76_RS01345: BWI76_RS01345 - 3-octaprenyl-4-hydroxybenzoate decarboxylase, at 274,756 to 276,225
_RS01345
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 272.347 kb on - strand, within BWI76_RS01325 at 272.522 kb on + strand at 272.781 kb on + strand, within BWI76_RS01330 at 272.796 kb on - strand, within BWI76_RS01330 at 272.822 kb on + strand, within BWI76_RS01330 at 272.835 kb on + strand, within BWI76_RS01330 at 272.915 kb on + strand, within BWI76_RS01330 at 273.194 kb on - strand at 273.210 kb on - strand at 273.253 kb on + strand at 273.358 kb on + strand at 273.407 kb on + strand, within BWI76_RS01335 at 273.479 kb on + strand, within BWI76_RS01335 at 273.615 kb on - strand, within BWI76_RS01335 at 273.799 kb on - strand, within BWI76_RS01335 at 273.848 kb on + strand, within BWI76_RS01335 at 273.985 kb on + strand, within BWI76_RS01335 at 274.028 kb on + strand at 274.028 kb on - strand at 274.036 kb on - strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.131 kb on - strand at 274.131 kb on - strand at 274.131 kb on - strand at 274.540 kb on - strand at 274.730 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand at 274.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 272,347 - BWI76_RS01325 0.75 +0.7 272,522 + +1.4 272,781 + BWI76_RS01330 0.38 +0.6 272,796 - BWI76_RS01330 0.40 -1.7 272,822 + BWI76_RS01330 0.44 +0.6 272,835 + BWI76_RS01330 0.45 -3.4 272,915 + BWI76_RS01330 0.56 -1.2 273,194 - -0.4 273,210 - +0.7 273,253 + +0.8 273,358 + -0.6 273,407 + BWI76_RS01335 0.14 +1.1 273,479 + BWI76_RS01335 0.23 -1.5 273,615 - BWI76_RS01335 0.40 +0.8 273,799 - BWI76_RS01335 0.64 +1.3 273,848 + BWI76_RS01335 0.70 -2.5 273,985 + BWI76_RS01335 0.87 +0.8 274,028 + +0.6 274,028 - +0.1 274,036 - +1.1 274,123 + -1.6 274,123 + +0.6 274,123 + +0.5 274,123 + +0.7 274,131 - -1.2 274,131 - +0.5 274,131 - +0.9 274,540 - +0.7 274,730 + +1.0 274,733 + -0.7 274,733 + +0.3 274,733 + -0.5 274,733 + +0.2 274,733 + +0.3 274,733 + +0.1
Or see this region's nucleotide sequence