Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2913

Experiment: MoYLS4 with Chlorite 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2911 and rpmE are separated by 201 nucleotidesrpmE and DVU2913 are separated by 114 nucleotidesDVU2913 and prfA are separated by 6 nucleotides DVU2911: DVU2911 - hemolysin A (TIGR), at 3,012,054 to 3,012,815 DVU2911 DVU2912: rpmE - ribosomal protein L31 (TIGR), at 3,013,017 to 3,013,232 rpmE DVU2913: DVU2913 - lipoprotein, putative (TIGR), at 3,013,347 to 3,014,354 DVU2913 DVU2914: prfA - peptide chain release factor 1 (TIGR), at 3,014,361 to 3,015,434 prfA Position (kb) 3013 3014 3015Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3012.359 kb on + strand, within DVU2911at 3012.372 kb on - strand, within DVU2911at 3012.457 kb on - strand, within DVU2911at 3012.474 kb on + strand, within DVU2911at 3012.477 kb on - strand, within DVU2911at 3012.482 kb on - strand, within DVU2911at 3012.482 kb on - strand, within DVU2911at 3012.525 kb on - strand, within DVU2911at 3012.534 kb on + strand, within DVU2911at 3012.703 kb on + strand, within DVU2911at 3012.723 kb on - strand, within DVU2911at 3012.742 kb on + strandat 3012.743 kb on - strandat 3012.747 kb on + strandat 3012.778 kb on - strandat 3012.789 kb on - strandat 3012.799 kb on - strandat 3013.661 kb on + strand, within DVU2913at 3013.661 kb on + strand, within DVU2913at 3013.666 kb on + strand, within DVU2913at 3013.753 kb on + strand, within DVU2913at 3013.761 kb on - strand, within DVU2913at 3013.881 kb on + strand, within DVU2913at 3013.929 kb on - strand, within DVU2913at 3013.964 kb on + strand, within DVU2913at 3014.027 kb on - strand, within DVU2913at 3014.028 kb on + strand, within DVU2913at 3014.040 kb on + strand, within DVU2913at 3014.048 kb on - strand, within DVU2913at 3014.048 kb on - strand, within DVU2913at 3014.048 kb on - strand, within DVU2913at 3014.106 kb on - strand, within DVU2913at 3014.111 kb on + strand, within DVU2913at 3014.111 kb on + strand, within DVU2913at 3014.119 kb on - strand, within DVU2913at 3014.119 kb on - strand, within DVU2913at 3014.195 kb on - strand, within DVU2913at 3014.200 kb on - strand, within DVU2913at 3014.200 kb on - strand, within DVU2913at 3014.278 kb on + strandat 3014.278 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chlorite 100uM
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3,012,359 + DVU2911 0.40 +0.7
3,012,372 - DVU2911 0.42 +1.7
3,012,457 - DVU2911 0.53 -0.7
3,012,474 + DVU2911 0.55 -0.8
3,012,477 - DVU2911 0.56 -0.3
3,012,482 - DVU2911 0.56 +1.1
3,012,482 - DVU2911 0.56 +2.3
3,012,525 - DVU2911 0.62 -0.7
3,012,534 + DVU2911 0.63 -0.1
3,012,703 + DVU2911 0.85 -0.4
3,012,723 - DVU2911 0.88 -1.3
3,012,742 + +0.9
3,012,743 - -0.5
3,012,747 + -0.0
3,012,778 - -0.6
3,012,789 - -0.3
3,012,799 - -0.6
3,013,661 + DVU2913 0.31 -0.7
3,013,661 + DVU2913 0.31 -1.0
3,013,666 + DVU2913 0.32 -1.4
3,013,753 + DVU2913 0.40 -0.4
3,013,761 - DVU2913 0.41 -1.2
3,013,881 + DVU2913 0.53 -0.6
3,013,929 - DVU2913 0.58 -0.5
3,013,964 + DVU2913 0.61 -0.3
3,014,027 - DVU2913 0.67 +0.6
3,014,028 + DVU2913 0.68 +1.2
3,014,040 + DVU2913 0.69 -0.4
3,014,048 - DVU2913 0.70 -0.6
3,014,048 - DVU2913 0.70 -2.8
3,014,048 - DVU2913 0.70 -0.4
3,014,106 - DVU2913 0.75 -0.8
3,014,111 + DVU2913 0.76 -2.3
3,014,111 + DVU2913 0.76 -2.1
3,014,119 - DVU2913 0.77 -0.7
3,014,119 - DVU2913 0.77 -0.2
3,014,195 - DVU2913 0.84 -0.3
3,014,200 - DVU2913 0.85 -1.0
3,014,200 - DVU2913 0.85 -0.5
3,014,278 + -0.4
3,014,278 + +0.5

Or see this region's nucleotide sequence