Experiment: MoYLS4 with Chlorite 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1068 and DVU1069 overlap by 4 nucleotides DVU1069 and rbsA are separated by 4 nucleotides
DVU1068: DVU1068 - branched-chain amino acid ABC transporter, permease protein (TIGR), at 1,171,964 to 1,173,028
DVU1068
DVU1069: DVU1069 - branched chain amino acid ABC transporter, permease protein (TIGR), at 1,173,025 to 1,173,945
DVU1069
DVU1070: rbsA - branched chain amino acid ABC transporter, ATP-binding protein (TIGR), at 1,173,950 to 1,175,524
rbsA
Position (kb)
1173
1174 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1172.156 kb on - strand, within DVU1068 at 1172.184 kb on + strand, within DVU1068 at 1172.263 kb on + strand, within DVU1068 at 1172.625 kb on + strand, within DVU1068 at 1172.712 kb on - strand, within DVU1068 at 1172.732 kb on + strand, within DVU1068 at 1172.764 kb on + strand, within DVU1068 at 1172.780 kb on - strand, within DVU1068 at 1173.069 kb on - strand at 1173.193 kb on - strand, within DVU1069 at 1173.197 kb on - strand, within DVU1069 at 1173.234 kb on + strand, within DVU1069 at 1173.328 kb on - strand, within DVU1069 at 1173.334 kb on - strand, within DVU1069 at 1173.468 kb on - strand, within DVU1069 at 1173.593 kb on + strand, within DVU1069 at 1173.595 kb on + strand, within DVU1069 at 1173.651 kb on + strand, within DVU1069 at 1173.688 kb on + strand, within DVU1069 at 1174.277 kb on + strand, within rbsA at 1174.333 kb on + strand, within rbsA at 1174.589 kb on + strand, within rbsA at 1174.758 kb on + strand, within rbsA at 1174.838 kb on - strand, within rbsA at 1174.938 kb on + strand, within rbsA
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chlorite 100uM remove 1,172,156 - DVU1068 0.18 +0.1 1,172,184 + DVU1068 0.21 -1.6 1,172,263 + DVU1068 0.28 +0.2 1,172,625 + DVU1068 0.62 -0.3 1,172,712 - DVU1068 0.70 -0.2 1,172,732 + DVU1068 0.72 -1.1 1,172,764 + DVU1068 0.75 -1.0 1,172,780 - DVU1068 0.77 -0.8 1,173,069 - -0.2 1,173,193 - DVU1069 0.18 -1.1 1,173,197 - DVU1069 0.19 +1.1 1,173,234 + DVU1069 0.23 -0.6 1,173,328 - DVU1069 0.33 -0.7 1,173,334 - DVU1069 0.34 -2.0 1,173,468 - DVU1069 0.48 -1.2 1,173,593 + DVU1069 0.62 -1.0 1,173,595 + DVU1069 0.62 -0.4 1,173,651 + DVU1069 0.68 -0.1 1,173,688 + DVU1069 0.72 +2.1 1,174,277 + rbsA DVU1070 0.21 -0.3 1,174,333 + rbsA DVU1070 0.24 -1.5 1,174,589 + rbsA DVU1070 0.41 +2.4 1,174,758 + rbsA DVU1070 0.51 -0.6 1,174,838 - rbsA DVU1070 0.56 +0.3 1,174,938 + rbsA DVU1070 0.63 -0.1
Or see this region's nucleotide sequence