Strain Fitness in Sinorhizobium meliloti 1021 around SMc02433

Experiment: Beta-Lactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02432 and SMc02433 are separated by 79 nucleotidesSMc02433 and SMc02434 are separated by 341 nucleotides SMc02432: SMc02432 - hypothetical protein, at 2,812,170 to 2,814,110 SMc02432 SMc02433: SMc02433 - ATP-dependent protease, at 2,814,190 to 2,816,796 SMc02433 SMc02434: SMc02434 - hypothetical protein, at 2,817,138 to 2,817,782 SMc02434 Position (kb) 2814 2815 2816 2817Strain fitness (log2 ratio) -1 0 1at 2814.321 kb on - strandat 2814.509 kb on - strand, within SMc02433at 2814.620 kb on + strand, within SMc02433at 2814.620 kb on + strand, within SMc02433at 2814.632 kb on - strand, within SMc02433at 2814.730 kb on - strand, within SMc02433at 2814.730 kb on - strand, within SMc02433at 2814.833 kb on + strand, within SMc02433at 2814.834 kb on - strand, within SMc02433at 2814.834 kb on - strand, within SMc02433at 2814.834 kb on - strand, within SMc02433at 2814.881 kb on + strand, within SMc02433at 2815.286 kb on + strand, within SMc02433at 2815.655 kb on + strand, within SMc02433at 2815.724 kb on + strand, within SMc02433at 2815.758 kb on + strand, within SMc02433at 2815.759 kb on - strand, within SMc02433at 2816.303 kb on + strand, within SMc02433at 2816.304 kb on - strand, within SMc02433at 2816.304 kb on - strand, within SMc02433at 2816.304 kb on - strand, within SMc02433at 2816.479 kb on + strand, within SMc02433at 2816.480 kb on - strand, within SMc02433at 2816.552 kb on + strandat 2816.552 kb on + strandat 2816.553 kb on - strandat 2816.686 kb on + strandat 2816.686 kb on + strandat 2816.687 kb on - strandat 2816.687 kb on - strandat 2816.687 kb on - strandat 2816.738 kb on + strandat 2816.738 kb on + strandat 2816.738 kb on + strandat 2816.738 kb on + strandat 2816.738 kb on + strandat 2816.739 kb on - strandat 2816.739 kb on - strandat 2816.739 kb on - strandat 2816.801 kb on + strandat 2816.837 kb on + strandat 2816.838 kb on - strandat 2816.882 kb on + strandat 2817.116 kb on + strandat 2817.116 kb on + strandat 2817.117 kb on - strandat 2817.117 kb on - strandat 2817.140 kb on - strandat 2817.140 kb on - strandat 2817.140 kb on - strandat 2817.140 kb on - strandat 2817.165 kb on - strandat 2817.418 kb on + strand, within SMc02434at 2817.469 kb on + strand, within SMc02434at 2817.470 kb on - strand, within SMc02434at 2817.470 kb on - strand, within SMc02434

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
remove
2,814,321 - +0.4
2,814,509 - SMc02433 0.12 -0.6
2,814,620 + SMc02433 0.16 -1.0
2,814,620 + SMc02433 0.16 -0.2
2,814,632 - SMc02433 0.17 +0.0
2,814,730 - SMc02433 0.21 +0.3
2,814,730 - SMc02433 0.21 +0.8
2,814,833 + SMc02433 0.25 +0.5
2,814,834 - SMc02433 0.25 +0.5
2,814,834 - SMc02433 0.25 -0.2
2,814,834 - SMc02433 0.25 -0.4
2,814,881 + SMc02433 0.27 -0.1
2,815,286 + SMc02433 0.42 -0.5
2,815,655 + SMc02433 0.56 -0.7
2,815,724 + SMc02433 0.59 -0.8
2,815,758 + SMc02433 0.60 +1.5
2,815,759 - SMc02433 0.60 +0.1
2,816,303 + SMc02433 0.81 -0.1
2,816,304 - SMc02433 0.81 +1.3
2,816,304 - SMc02433 0.81 +0.2
2,816,304 - SMc02433 0.81 -0.1
2,816,479 + SMc02433 0.88 -0.7
2,816,480 - SMc02433 0.88 +0.3
2,816,552 + +0.9
2,816,552 + -0.4
2,816,553 - +0.1
2,816,686 + -0.3
2,816,686 + -0.4
2,816,687 - -0.2
2,816,687 - +0.2
2,816,687 - -0.1
2,816,738 + -0.5
2,816,738 + +0.1
2,816,738 + +0.0
2,816,738 + +0.1
2,816,738 + +0.0
2,816,739 - +1.1
2,816,739 - +0.1
2,816,739 - +1.1
2,816,801 + +0.1
2,816,837 + -0.1
2,816,838 - -1.2
2,816,882 + -0.4
2,817,116 + +0.2
2,817,116 + +0.5
2,817,117 - +0.1
2,817,117 - +0.4
2,817,140 - +0.7
2,817,140 - +0.6
2,817,140 - +0.3
2,817,140 - +0.4
2,817,165 - +0.0
2,817,418 + SMc02434 0.43 -0.9
2,817,469 + SMc02434 0.51 +0.0
2,817,470 - SMc02434 0.51 +0.4
2,817,470 - SMc02434 0.51 +0.0

Or see this region's nucleotide sequence