Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00921 and SMc00931 are separated by 73 nucleotides SMc00931 and SMc00919 are separated by 232 nucleotides SMc00919 and SMc00918 are separated by 5 nucleotides
SMc00921: SMc00921 - signal peptide protein, at 862,031 to 862,417
SMc00921
SMc00931: SMc00931 - hypothetical protein, at 862,491 to 862,916
SMc00931
SMc00919: SMc00919 - histidyl-tRNA synthetase, at 863,149 to 864,663
SMc00919
SMc00918: SMc00918 - ATP phosphoribosyltransferase regulatory subunit, at 864,669 to 865,808
SMc00918
Position (kb) 863
864
865 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 862.418 kb on - strand at 862.562 kb on + strand, within SMc00931 at 862.563 kb on - strand, within SMc00931 at 862.563 kb on - strand, within SMc00931 at 862.670 kb on + strand, within SMc00931 at 862.671 kb on - strand, within SMc00931 at 862.671 kb on - strand, within SMc00931 at 862.703 kb on - strand, within SMc00931 at 862.773 kb on + strand, within SMc00931 at 862.773 kb on + strand, within SMc00931 at 862.774 kb on - strand, within SMc00931 at 862.774 kb on - strand, within SMc00931 at 862.774 kb on - strand, within SMc00931 at 862.881 kb on + strand at 862.882 kb on - strand at 862.882 kb on - strand at 862.917 kb on - strand at 862.917 kb on - strand at 862.975 kb on - strand at 864.747 kb on - strand at 864.888 kb on - strand, within SMc00918 at 864.919 kb on - strand, within SMc00918 at 864.919 kb on - strand, within SMc00918 at 864.924 kb on + strand, within SMc00918 at 864.924 kb on + strand, within SMc00918 at 864.925 kb on - strand, within SMc00918 at 864.925 kb on - strand, within SMc00918 at 864.972 kb on + strand, within SMc00918 at 864.972 kb on + strand, within SMc00918 at 865.369 kb on + strand, within SMc00918 at 865.370 kb on - strand, within SMc00918 at 865.629 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.633 kb on - strand, within SMc00918 at 865.633 kb on - strand, within SMc00918
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 862,418 - +0.2 862,562 + SMc00931 0.17 -0.6 862,563 - SMc00931 0.17 -0.1 862,563 - SMc00931 0.17 +0.8 862,670 + SMc00931 0.42 +0.1 862,671 - SMc00931 0.42 +0.1 862,671 - SMc00931 0.42 +1.0 862,703 - SMc00931 0.50 +0.4 862,773 + SMc00931 0.66 +0.5 862,773 + SMc00931 0.66 -0.7 862,774 - SMc00931 0.66 -0.3 862,774 - SMc00931 0.66 -0.4 862,774 - SMc00931 0.66 -0.1 862,881 + +3.5 862,882 - -0.3 862,882 - +0.8 862,917 - -0.1 862,917 - +0.2 862,975 - +0.6 864,747 - -1.7 864,888 - SMc00918 0.19 -4.8 864,919 - SMc00918 0.22 -3.7 864,919 - SMc00918 0.22 -3.0 864,924 + SMc00918 0.22 -3.1 864,924 + SMc00918 0.22 -6.0 864,925 - SMc00918 0.22 -5.6 864,925 - SMc00918 0.22 -3.0 864,972 + SMc00918 0.27 -1.7 864,972 + SMc00918 0.27 -5.1 865,369 + SMc00918 0.61 -2.0 865,370 - SMc00918 0.61 -5.6 865,629 + SMc00918 0.84 -5.3 865,632 + SMc00918 0.84 -1.1 865,632 + SMc00918 0.84 -5.9 865,632 + SMc00918 0.84 -3.4 865,633 - SMc00918 0.85 -2.3 865,633 - SMc00918 0.85 -4.7
Or see this region's nucleotide sequence