Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21654

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21652 and SM_b21653 are separated by 93 nucleotidesSM_b21653 and SM_b21654 overlap by 4 nucleotidesSM_b21654 and SM_b21655 are separated by 5 nucleotides SM_b21652: SM_b21652 - ABC transporter for Lactose, periplasmic substrate-binding component (from data), at 1 to 1,275 _b21652 SM_b21653: SM_b21653 - ABC transporter for Lactose, permease component 1 (from data), at 1,369 to 2,265 _b21653 SM_b21654: SM_b21654 - ABC transporter for Lactose, permease component 2 (from data), at 2,262 to 3,080 _b21654 SM_b21655: SM_b21655 - Beta-galactosidase (EC 3.2.1.23) (from data), at 3,086 to 5,353 _b21655 Position (kb) 2 3 4Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1.402 kb on + strandat 1.402 kb on + strandat 1.403 kb on - strandat 1.739 kb on - strand, within SM_b21653at 1.892 kb on - strand, within SM_b21653at 1.906 kb on + strand, within SM_b21653at 1.907 kb on - strand, within SM_b21653at 1.907 kb on - strand, within SM_b21653at 2.077 kb on + strand, within SM_b21653at 2.077 kb on + strand, within SM_b21653at 2.077 kb on + strand, within SM_b21653at 2.078 kb on - strand, within SM_b21653at 2.078 kb on - strand, within SM_b21653at 2.079 kb on + strand, within SM_b21653at 2.080 kb on - strand, within SM_b21653at 2.134 kb on + strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.140 kb on + strand, within SM_b21653at 2.141 kb on - strand, within SM_b21653at 2.195 kb on - strandat 2.195 kb on - strandat 2.302 kb on - strandat 2.302 kb on - strandat 2.302 kb on - strandat 2.721 kb on + strand, within SM_b21654at 2.722 kb on - strand, within SM_b21654at 2.722 kb on - strand, within SM_b21654at 2.800 kb on + strand, within SM_b21654at 2.801 kb on - strand, within SM_b21654at 2.801 kb on - strand, within SM_b21654at 2.814 kb on + strand, within SM_b21654at 2.814 kb on + strand, within SM_b21654at 2.815 kb on - strand, within SM_b21654at 2.838 kb on + strand, within SM_b21654at 2.839 kb on - strand, within SM_b21654at 2.883 kb on + strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.961 kb on + strand, within SM_b21654at 2.962 kb on - strand, within SM_b21654at 2.964 kb on + strand, within SM_b21654at 3.033 kb on + strandat 3.079 kb on - strandat 3.079 kb on - strandat 3.101 kb on - strandat 3.218 kb on + strandat 3.236 kb on + strandat 3.236 kb on + strandat 3.254 kb on + strandat 3.370 kb on + strand, within SM_b21655at 3.380 kb on + strand, within SM_b21655at 3.497 kb on + strand, within SM_b21655at 3.506 kb on + strand, within SM_b21655at 3.506 kb on + strand, within SM_b21655at 3.506 kb on + strand, within SM_b21655at 3.507 kb on - strand, within SM_b21655at 3.518 kb on + strand, within SM_b21655at 3.518 kb on + strand, within SM_b21655at 3.519 kb on - strand, within SM_b21655at 3.565 kb on + strand, within SM_b21655at 3.645 kb on + strand, within SM_b21655at 3.797 kb on + strand, within SM_b21655at 3.797 kb on + strand, within SM_b21655at 3.798 kb on - strand, within SM_b21655at 3.951 kb on - strand, within SM_b21655at 4.043 kb on + strand, within SM_b21655

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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1,402 + -2.2
1,402 + -2.2
1,403 - -4.0
1,739 - SM_b21653 0.41 -5.1
1,892 - SM_b21653 0.58 -2.6
1,906 + SM_b21653 0.60 -1.0
1,907 - SM_b21653 0.60 -4.3
1,907 - SM_b21653 0.60 -4.3
2,077 + SM_b21653 0.79 -3.3
2,077 + SM_b21653 0.79 -3.5
2,077 + SM_b21653 0.79 -3.4
2,078 - SM_b21653 0.79 -2.8
2,078 - SM_b21653 0.79 -2.0
2,079 + SM_b21653 0.79 -1.9
2,080 - SM_b21653 0.79 -3.1
2,134 + SM_b21653 0.85 -1.8
2,135 - SM_b21653 0.85 -2.1
2,135 - SM_b21653 0.85 -1.0
2,140 + SM_b21653 0.86 -1.0
2,141 - SM_b21653 0.86 -5.0
2,195 - -5.5
2,195 - -1.9
2,302 - -4.2
2,302 - -1.7
2,302 - -3.9
2,721 + SM_b21654 0.56 -3.3
2,722 - SM_b21654 0.56 -2.1
2,722 - SM_b21654 0.56 -4.6
2,800 + SM_b21654 0.66 -2.3
2,801 - SM_b21654 0.66 -4.9
2,801 - SM_b21654 0.66 -2.0
2,814 + SM_b21654 0.67 +0.2
2,814 + SM_b21654 0.67 -4.3
2,815 - SM_b21654 0.68 -2.7
2,838 + SM_b21654 0.70 -4.7
2,839 - SM_b21654 0.70 -0.8
2,883 + SM_b21654 0.76 -3.1
2,884 - SM_b21654 0.76 -2.2
2,884 - SM_b21654 0.76 -2.4
2,884 - SM_b21654 0.76 -2.9
2,961 + SM_b21654 0.85 -2.3
2,962 - SM_b21654 0.85 -2.9
2,964 + SM_b21654 0.86 -4.0
3,033 + -3.1
3,079 - -4.2
3,079 - -3.2
3,101 - -0.8
3,218 + -1.0
3,236 + -2.4
3,236 + -5.2
3,254 + -3.9
3,370 + SM_b21655 0.13 -2.0
3,380 + SM_b21655 0.13 -3.2
3,497 + SM_b21655 0.18 -3.7
3,506 + SM_b21655 0.19 -4.3
3,506 + SM_b21655 0.19 -4.4
3,506 + SM_b21655 0.19 -3.7
3,507 - SM_b21655 0.19 -2.4
3,518 + SM_b21655 0.19 -5.6
3,518 + SM_b21655 0.19 -4.0
3,519 - SM_b21655 0.19 -3.0
3,565 + SM_b21655 0.21 -2.8
3,645 + SM_b21655 0.25 -4.6
3,797 + SM_b21655 0.31 -4.0
3,797 + SM_b21655 0.31 -5.7
3,798 - SM_b21655 0.31 -4.8
3,951 - SM_b21655 0.38 -4.0
4,043 + SM_b21655 0.42 -4.5

Or see this region's nucleotide sequence