Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24435 and BWI76_RS24440 are separated by 74 nucleotides BWI76_RS24440 and BWI76_RS24445 are separated by 378 nucleotides BWI76_RS24445 and BWI76_RS24450 are separated by 54 nucleotides
BWI76_RS24435: BWI76_RS24435 - hypothetical protein, at 5,094,906 to 5,095,958
_RS24435
BWI76_RS24440: BWI76_RS24440 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 5,096,033 to 5,096,686
_RS24440
BWI76_RS24445: BWI76_RS24445 - hypothetical protein, at 5,097,065 to 5,097,346
_RS24445
BWI76_RS24450: BWI76_RS24450 - glycogen synthase, at 5,097,401 to 5,097,610
_RS24450
Position (kb) 5096
5097 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5095.036 kb on + strand, within BWI76_RS24435 at 5095.037 kb on + strand, within BWI76_RS24435 at 5095.044 kb on - strand, within BWI76_RS24435 at 5095.044 kb on - strand, within BWI76_RS24435 at 5095.045 kb on + strand, within BWI76_RS24435 at 5095.045 kb on - strand, within BWI76_RS24435 at 5095.045 kb on - strand, within BWI76_RS24435 at 5095.053 kb on - strand, within BWI76_RS24435 at 5095.082 kb on + strand, within BWI76_RS24435 at 5095.096 kb on - strand, within BWI76_RS24435 at 5095.102 kb on + strand, within BWI76_RS24435 at 5095.102 kb on + strand, within BWI76_RS24435 at 5095.102 kb on + strand, within BWI76_RS24435 at 5095.104 kb on + strand, within BWI76_RS24435 at 5095.110 kb on - strand, within BWI76_RS24435 at 5095.110 kb on - strand, within BWI76_RS24435 at 5095.110 kb on - strand, within BWI76_RS24435 at 5095.170 kb on + strand, within BWI76_RS24435 at 5095.170 kb on + strand, within BWI76_RS24435 at 5095.170 kb on + strand, within BWI76_RS24435 at 5095.170 kb on + strand, within BWI76_RS24435 at 5095.216 kb on + strand, within BWI76_RS24435 at 5095.229 kb on - strand, within BWI76_RS24435 at 5095.246 kb on + strand, within BWI76_RS24435 at 5095.259 kb on + strand, within BWI76_RS24435 at 5095.260 kb on + strand, within BWI76_RS24435 at 5095.267 kb on - strand, within BWI76_RS24435 at 5095.267 kb on - strand, within BWI76_RS24435 at 5095.267 kb on - strand, within BWI76_RS24435 at 5095.273 kb on - strand, within BWI76_RS24435 at 5095.284 kb on - strand, within BWI76_RS24435 at 5095.285 kb on + strand, within BWI76_RS24435 at 5095.285 kb on + strand, within BWI76_RS24435 at 5095.285 kb on + strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.293 kb on - strand at 5095.293 kb on - strand, within BWI76_RS24435 at 5095.305 kb on - strand, within BWI76_RS24435 at 5095.328 kb on + strand, within BWI76_RS24435 at 5095.336 kb on - strand, within BWI76_RS24435 at 5095.380 kb on - strand, within BWI76_RS24435 at 5095.385 kb on + strand, within BWI76_RS24435 at 5095.414 kb on + strand, within BWI76_RS24435 at 5095.461 kb on + strand, within BWI76_RS24435 at 5095.462 kb on + strand, within BWI76_RS24435 at 5095.467 kb on + strand, within BWI76_RS24435 at 5095.469 kb on - strand at 5095.476 kb on + strand, within BWI76_RS24435 at 5095.481 kb on + strand, within BWI76_RS24435 at 5095.484 kb on - strand, within BWI76_RS24435 at 5095.536 kb on + strand, within BWI76_RS24435 at 5095.536 kb on + strand, within BWI76_RS24435 at 5095.536 kb on + strand, within BWI76_RS24435 at 5095.541 kb on + strand, within BWI76_RS24435 at 5095.544 kb on - strand, within BWI76_RS24435 at 5095.544 kb on - strand, within BWI76_RS24435 at 5095.556 kb on + strand, within BWI76_RS24435 at 5095.661 kb on + strand, within BWI76_RS24435 at 5095.661 kb on + strand, within BWI76_RS24435 at 5095.678 kb on + strand, within BWI76_RS24435 at 5095.686 kb on - strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.740 kb on + strand, within BWI76_RS24435 at 5095.787 kb on + strand, within BWI76_RS24435 at 5095.787 kb on + strand, within BWI76_RS24435 at 5095.787 kb on + strand, within BWI76_RS24435 at 5095.787 kb on + strand, within BWI76_RS24435 at 5095.795 kb on + strand, within BWI76_RS24435 at 5095.795 kb on - strand, within BWI76_RS24435 at 5095.831 kb on + strand, within BWI76_RS24435 at 5095.831 kb on + strand at 5095.833 kb on + strand, within BWI76_RS24435 at 5095.833 kb on + strand, within BWI76_RS24435 at 5095.847 kb on + strand, within BWI76_RS24435 at 5095.847 kb on + strand, within BWI76_RS24435 at 5095.847 kb on + strand, within BWI76_RS24435 at 5095.850 kb on + strand, within BWI76_RS24435 at 5095.855 kb on + strand at 5095.865 kb on + strand at 5095.865 kb on + strand at 5095.868 kb on - strand at 5095.922 kb on - strand at 5095.924 kb on + strand at 5095.924 kb on + strand at 5095.929 kb on + strand at 5095.932 kb on - strand at 5095.932 kb on - strand at 5095.932 kb on - strand at 5095.932 kb on - strand at 5095.989 kb on - strand at 5096.039 kb on + strand at 5096.039 kb on + strand at 5096.044 kb on - strand at 5096.047 kb on - strand at 5096.047 kb on - strand at 5096.056 kb on + strand at 5096.060 kb on + strand at 5096.969 kb on + strand at 5097.035 kb on + strand at 5097.035 kb on + strand at 5097.035 kb on + strand at 5097.040 kb on + strand at 5097.043 kb on - strand at 5097.050 kb on + strand at 5097.058 kb on - strand at 5097.418 kb on + strand at 5097.675 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 5,095,036 + BWI76_RS24435 0.12 -1.8 5,095,037 + BWI76_RS24435 0.12 +0.3 5,095,044 - BWI76_RS24435 0.13 +1.6 5,095,044 - BWI76_RS24435 0.13 -0.1 5,095,045 + BWI76_RS24435 0.13 -2.4 5,095,045 - BWI76_RS24435 0.13 +0.3 5,095,045 - BWI76_RS24435 0.13 -0.3 5,095,053 - BWI76_RS24435 0.14 +0.0 5,095,082 + BWI76_RS24435 0.17 -1.3 5,095,096 - BWI76_RS24435 0.18 +0.8 5,095,102 + BWI76_RS24435 0.19 -0.4 5,095,102 + BWI76_RS24435 0.19 +2.8 5,095,102 + BWI76_RS24435 0.19 -2.1 5,095,104 + BWI76_RS24435 0.19 +1.0 5,095,110 - BWI76_RS24435 0.19 +0.0 5,095,110 - BWI76_RS24435 0.19 -0.5 5,095,110 - BWI76_RS24435 0.19 +0.0 5,095,170 + BWI76_RS24435 0.25 +2.3 5,095,170 + BWI76_RS24435 0.25 -2.1 5,095,170 + BWI76_RS24435 0.25 -1.0 5,095,170 + BWI76_RS24435 0.25 -2.8 5,095,216 + BWI76_RS24435 0.29 -1.0 5,095,229 - BWI76_RS24435 0.31 +1.5 5,095,246 + BWI76_RS24435 0.32 +0.7 5,095,259 + BWI76_RS24435 0.34 -1.0 5,095,260 + BWI76_RS24435 0.34 -1.3 5,095,267 - BWI76_RS24435 0.34 +0.2 5,095,267 - BWI76_RS24435 0.34 -2.0 5,095,267 - BWI76_RS24435 0.34 +0.0 5,095,273 - BWI76_RS24435 0.35 -1.3 5,095,284 - BWI76_RS24435 0.36 +0.4 5,095,285 + BWI76_RS24435 0.36 -0.9 5,095,285 + BWI76_RS24435 0.36 -1.2 5,095,285 + BWI76_RS24435 0.36 -1.0 5,095,293 - BWI76_RS24435 0.37 -0.5 5,095,293 - BWI76_RS24435 0.37 +0.6 5,095,293 - BWI76_RS24435 0.37 -0.6 5,095,293 - BWI76_RS24435 0.37 +0.4 5,095,293 - BWI76_RS24435 0.37 -1.2 5,095,293 - +1.0 5,095,293 - BWI76_RS24435 0.37 +0.6 5,095,305 - BWI76_RS24435 0.38 +0.0 5,095,328 + BWI76_RS24435 0.40 +0.4 5,095,336 - BWI76_RS24435 0.41 -1.0 5,095,380 - BWI76_RS24435 0.45 +1.0 5,095,385 + BWI76_RS24435 0.45 -0.1 5,095,414 + BWI76_RS24435 0.48 +0.0 5,095,461 + BWI76_RS24435 0.53 -2.5 5,095,462 + BWI76_RS24435 0.53 -0.6 5,095,467 + BWI76_RS24435 0.53 -0.1 5,095,469 - +1.0 5,095,476 + BWI76_RS24435 0.54 -0.2 5,095,481 + BWI76_RS24435 0.55 -1.8 5,095,484 - BWI76_RS24435 0.55 +0.0 5,095,536 + BWI76_RS24435 0.60 -2.3 5,095,536 + BWI76_RS24435 0.60 -0.5 5,095,536 + BWI76_RS24435 0.60 +1.0 5,095,541 + BWI76_RS24435 0.60 -1.3 5,095,544 - BWI76_RS24435 0.61 +1.0 5,095,544 - BWI76_RS24435 0.61 +0.7 5,095,556 + BWI76_RS24435 0.62 -1.3 5,095,661 + BWI76_RS24435 0.72 +1.0 5,095,661 + BWI76_RS24435 0.72 +1.0 5,095,678 + BWI76_RS24435 0.73 +0.8 5,095,686 - BWI76_RS24435 0.74 -0.5 5,095,740 + BWI76_RS24435 0.79 -1.3 5,095,740 + BWI76_RS24435 0.79 -0.2 5,095,740 + BWI76_RS24435 0.79 -1.3 5,095,740 + BWI76_RS24435 0.79 +0.4 5,095,740 + BWI76_RS24435 0.79 -1.5 5,095,787 + BWI76_RS24435 0.84 +0.0 5,095,787 + BWI76_RS24435 0.84 +0.0 5,095,787 + BWI76_RS24435 0.84 +0.4 5,095,787 + BWI76_RS24435 0.84 -2.0 5,095,795 + BWI76_RS24435 0.84 -1.7 5,095,795 - BWI76_RS24435 0.84 -0.3 5,095,831 + BWI76_RS24435 0.88 +0.6 5,095,831 + +1.0 5,095,833 + BWI76_RS24435 0.88 -1.0 5,095,833 + BWI76_RS24435 0.88 +1.8 5,095,847 + BWI76_RS24435 0.89 -0.6 5,095,847 + BWI76_RS24435 0.89 -1.8 5,095,847 + BWI76_RS24435 0.89 -2.3 5,095,850 + BWI76_RS24435 0.90 +0.5 5,095,855 + +0.6 5,095,865 + -0.5 5,095,865 + +0.1 5,095,868 - -0.1 5,095,922 - -0.5 5,095,924 + +0.2 5,095,924 + +0.3 5,095,929 + +1.6 5,095,932 - -0.2 5,095,932 - -2.9 5,095,932 - -1.0 5,095,932 - -0.1 5,095,989 - -0.1 5,096,039 + +1.0 5,096,039 + +0.3 5,096,044 - +2.1 5,096,047 - +0.9 5,096,047 - -0.7 5,096,056 + +0.0 5,096,060 + +0.2 5,096,969 + -0.3 5,097,035 + -0.3 5,097,035 + +0.6 5,097,035 + +0.7 5,097,040 + +0.4 5,097,043 - +1.0 5,097,050 + +0.1 5,097,058 - +1.0 5,097,418 + +1.0 5,097,675 + -0.1
Or see this region's nucleotide sequence