Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19340 and BWI76_RS19345 are separated by 9 nucleotides BWI76_RS19345 and BWI76_RS19350 are separated by 206 nucleotides
BWI76_RS19340: BWI76_RS19340 - xylulokinase, at 4,029,434 to 4,030,897
_RS19340
BWI76_RS19345: BWI76_RS19345 - D-arabinitol 4-dehydrogenase, at 4,030,907 to 4,032,274
_RS19345
BWI76_RS19350: BWI76_RS19350 - DeoR family transcriptional regulator, at 4,032,481 to 4,033,422
_RS19350
Position (kb) 4030
4031
4032
4033 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4029.915 kb on + strand, within BWI76_RS19340 at 4030.277 kb on + strand, within BWI76_RS19340 at 4030.302 kb on - strand, within BWI76_RS19340 at 4030.325 kb on - strand, within BWI76_RS19340 at 4030.380 kb on - strand, within BWI76_RS19340 at 4030.467 kb on - strand, within BWI76_RS19340 at 4030.729 kb on - strand, within BWI76_RS19340 at 4030.771 kb on + strand at 4031.063 kb on - strand, within BWI76_RS19345 at 4031.247 kb on - strand, within BWI76_RS19345 at 4031.292 kb on - strand, within BWI76_RS19345 at 4031.377 kb on - strand, within BWI76_RS19345 at 4031.391 kb on - strand, within BWI76_RS19345 at 4031.779 kb on + strand, within BWI76_RS19345 at 4031.975 kb on - strand, within BWI76_RS19345 at 4032.236 kb on + strand at 4033.038 kb on - strand, within BWI76_RS19350
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,029,915 + BWI76_RS19340 0.33 +0.8 4,030,277 + BWI76_RS19340 0.58 +1.1 4,030,302 - BWI76_RS19340 0.59 +1.3 4,030,325 - BWI76_RS19340 0.61 -0.1 4,030,380 - BWI76_RS19340 0.65 +0.5 4,030,467 - BWI76_RS19340 0.71 +0.4 4,030,729 - BWI76_RS19340 0.88 +0.9 4,030,771 + +1.0 4,031,063 - BWI76_RS19345 0.11 -0.4 4,031,247 - BWI76_RS19345 0.25 +1.3 4,031,292 - BWI76_RS19345 0.28 +4.5 4,031,377 - BWI76_RS19345 0.34 +0.0 4,031,391 - BWI76_RS19345 0.35 +1.2 4,031,779 + BWI76_RS19345 0.64 +0.9 4,031,975 - BWI76_RS19345 0.78 +2.3 4,032,236 + +3.6 4,033,038 - BWI76_RS19350 0.59 -0.1
Or see this region's nucleotide sequence