Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18690

Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
3,874,140	+		BWI76_RS18685	0.38	+0.6
3,874,147	-		BWI76_RS18685	0.38	+0.9
3,874,147	-		BWI76_RS18685	0.38	+0.6
3,874,174	+		BWI76_RS18685	0.40	-1.2
3,874,174	+		BWI76_RS18685	0.40	-0.4
3,874,182	-		BWI76_RS18685	0.41	+0.4
3,874,182	-		BWI76_RS18685	0.41	+0.7
3,874,188	+		BWI76_RS18685	0.42	-0.3
3,874,193	-		BWI76_RS18685	0.42	-0.5
3,874,199	+		BWI76_RS18685	0.42	-0.1
3,874,210	+		BWI76_RS18685	0.43	-1.2
3,874,283	-		BWI76_RS18685	0.49	+0.1
3,874,283	-		BWI76_RS18685	0.49	-1.6
3,874,283	-		BWI76_RS18685	0.49	-1.3
3,874,284	-		BWI76_RS18685	0.49	+0.2
3,874,294	-		BWI76_RS18685	0.50	+0.4
3,874,344	-		BWI76_RS18685	0.53	+0.3
3,874,497	+		BWI76_RS18685	0.65	-0.2
3,874,520	+		BWI76_RS18685	0.67	+0.3
3,874,528	-		BWI76_RS18685	0.67	+0.5
3,874,577	+		BWI76_RS18685	0.71	+1.2
3,874,577	+		BWI76_RS18685	0.71	-1.4
3,874,614	-		BWI76_RS18685	0.74	+0.2
3,874,652	-		BWI76_RS18685	0.76	+0.3
3,874,697	+		BWI76_RS18685	0.80	-0.3
3,874,742	-		BWI76_RS18685	0.83	+1.7
3,874,742	-		BWI76_RS18685	0.83	+1.9
3,874,742	-		BWI76_RS18685	0.83	+0.9
3,874,771	-		BWI76_RS18685	0.85	-0.3
3,874,772	-		BWI76_RS18685	0.85	+0.6
3,874,783	-		BWI76_RS18685	0.86	-0.4
3,874,793	-		BWI76_RS18685	0.87	+0.1
3,874,794	-		BWI76_RS18685	0.87	+0.4
3,874,809	+		BWI76_RS18685	0.88	+0.6
3,874,817	-		BWI76_RS18685	0.89	+0.3
3,874,817	-		BWI76_RS18685	0.89	-0.6
3,874,817	-		BWI76_RS18685	0.89	-0.5
3,874,841	+				+0.8
3,874,868	+				-1.6
3,874,868	+				+0.8
3,874,876	-				-0.0
3,874,919	+				-0.1
3,874,928	-				+0.4
3,874,929	-				-2.6
3,874,934	-				+0.6
3,874,940	-				-2.1
3,874,942	-				-1.0
3,874,979	-				+0.0
3,874,987	+				+0.5
3,874,987	+				+3.3
3,874,995	-				+0.3
3,874,995	-				+0.8
3,874,995	-				-0.7
3,874,995	-				+0.5
3,874,995	-				+1.4
3,874,995	-				+0.0
3,874,995	-				-0.8
3,874,995	-				+0.0
3,874,995	-				-1.1
3,874,995	-				-0.3
3,874,995	-				-0.6
3,874,995	-				+0.7
3,875,034	-				-0.8
3,875,042	-				+0.4
3,875,090	-				-0.4
3,875,121	-				-0.4
3,875,121	-				+0.6
3,875,123	+				-0.6
3,875,123	+				-0.1
3,875,128	+				-2.1
3,875,136	-		BWI76_RS18690	0.10	+0.7
3,875,141	-		BWI76_RS18690	0.11	-0.4
3,875,151	-		BWI76_RS18690	0.11	+1.4
3,875,188	+		BWI76_RS18690	0.14	-0.6
3,875,188	+		BWI76_RS18690	0.14	-1.1
3,875,193	+		BWI76_RS18690	0.14	+0.2
3,875,193	+		BWI76_RS18690	0.14	+0.8
3,875,193	+		BWI76_RS18690	0.14	-1.5
3,875,196	-		BWI76_RS18690	0.14	-1.6
3,875,196	-		BWI76_RS18690	0.14	+0.5
3,875,196	-		BWI76_RS18690	0.14	+0.7
3,875,201	-		BWI76_RS18690	0.15	+1.1
3,875,201	-		BWI76_RS18690	0.15	+1.0
3,875,201	-		BWI76_RS18690	0.15	-0.2
3,875,201	-		BWI76_RS18690	0.15	+0.7
3,875,208	-		BWI76_RS18690	0.15	+0.7
3,875,215	-		BWI76_RS18690	0.16	-1.3
3,875,226	-		BWI76_RS18690	0.16	-0.0
3,875,227	+		BWI76_RS18690	0.16	-0.8
3,875,227	+		BWI76_RS18690	0.16	-0.3
3,875,235	-		BWI76_RS18690	0.17	+0.7
3,875,235	-		BWI76_RS18690	0.17	-0.0
3,875,235	-		BWI76_RS18690	0.17	-1.6
3,875,235	-		BWI76_RS18690	0.17	-0.1
3,875,235	-		BWI76_RS18690	0.17	-0.1
3,875,235	-		BWI76_RS18690	0.17	-0.0
3,875,235	-		BWI76_RS18690	0.17	-1.6
3,875,235	-		BWI76_RS18690	0.17	+0.5
3,875,235	-		BWI76_RS18690	0.17	+1.1
3,875,266	-		BWI76_RS18690	0.19	+0.5
3,875,274	-		BWI76_RS18690	0.19	-0.2
3,875,309	-		BWI76_RS18690	0.22	+1.2
3,875,324	-		BWI76_RS18690	0.23	+1.0
3,875,359	+		BWI76_RS18690	0.25	+0.4
3,875,378	-		BWI76_RS18690	0.26	+0.1
3,875,380	-		BWI76_RS18690	0.26	-0.2
3,875,430	+		BWI76_RS18690	0.30	-1.1
3,875,430	+		BWI76_RS18690	0.30	+0.1
3,875,430	+		BWI76_RS18690	0.30	-0.1
3,875,430	+		BWI76_RS18690	0.30	-4.2
3,875,430	+		BWI76_RS18690	0.30	-0.6
3,875,435	+		BWI76_RS18690	0.30	-1.6
3,875,435	+		BWI76_RS18690	0.30	+0.9
3,875,435	+		BWI76_RS18690	0.30	+0.3
3,875,437	+		BWI76_RS18690	0.30	-1.8
3,875,437	+		BWI76_RS18690	0.30	-1.1
3,875,437	+		BWI76_RS18690	0.30	+0.3
3,875,437	+		BWI76_RS18690	0.30	+1.1
3,875,437	+		BWI76_RS18690	0.30	-2.4
3,875,438	-		BWI76_RS18690	0.30	-0.8
3,875,445	-		BWI76_RS18690	0.31	-0.6
3,875,445	-		BWI76_RS18690	0.31	-0.3
3,875,445	-		BWI76_RS18690	0.31	+1.5
3,875,445	-		BWI76_RS18690	0.31	-0.7
3,875,475	-				+0.9
3,875,550	+		BWI76_RS18690	0.37	-0.6
3,875,554	+		BWI76_RS18690	0.38	-2.8
3,875,558	-		BWI76_RS18690	0.38	-0.6
3,875,564	+		BWI76_RS18690	0.38	+0.4
3,875,641	-		BWI76_RS18690	0.43	-1.4
3,875,699	+		BWI76_RS18690	0.47	-2.1
3,875,699	+		BWI76_RS18690	0.47	-2.8
3,875,699	+		BWI76_RS18690	0.47	-0.4
3,875,699	+		BWI76_RS18690	0.47	-0.4
3,875,717	-		BWI76_RS18690	0.48	-0.5
3,875,717	-		BWI76_RS18690	0.48	-1.2
3,875,775	+		BWI76_RS18690	0.52	-0.6
3,875,783	-		BWI76_RS18690	0.53	+0.0
3,875,835	-		BWI76_RS18690	0.56	-1.4
3,875,912	-		BWI76_RS18690	0.61	+1.1
3,875,945	+		BWI76_RS18690	0.63	+0.5
3,875,945	+		BWI76_RS18690	0.63	-1.9
3,875,945	+		BWI76_RS18690	0.63	+1.0
3,875,945	+				-0.6
3,875,953	-		BWI76_RS18690	0.64	-0.6
3,875,953	-		BWI76_RS18690	0.64	+1.0
3,875,953	-		BWI76_RS18690	0.64	-2.2
3,875,953	-		BWI76_RS18690	0.64	-1.6
3,875,953	-		BWI76_RS18690	0.64	+1.5
3,875,953	-		BWI76_RS18690	0.64	+1.3
3,875,953	-		BWI76_RS18690	0.64	+0.6
3,876,083	+		BWI76_RS18690	0.72	+1.9
3,876,083	+		BWI76_RS18690	0.72	-1.4
3,876,083	+		BWI76_RS18690	0.72	+0.1
3,876,091	-		BWI76_RS18690	0.73	-3.4
3,876,091	-		BWI76_RS18690	0.73	-4.2
3,876,153	+		BWI76_RS18690	0.77	+0.3
3,876,161	-		BWI76_RS18690	0.77	+1.7
3,876,161	-		BWI76_RS18690	0.77	-1.5
3,876,161	-		BWI76_RS18690	0.77	-2.3
3,876,161	-		BWI76_RS18690	0.77	+1.1
3,876,194	+		BWI76_RS18690	0.79	+0.9
3,876,194	+		BWI76_RS18690	0.79	+0.9
3,876,229	+		BWI76_RS18690	0.82	-0.4
3,876,283	-		BWI76_RS18690	0.85	+0.9
3,876,298	+		BWI76_RS18690	0.86	-0.6
3,876,304	+		BWI76_RS18690	0.86	+0.6
3,876,316	+		BWI76_RS18690	0.87	-1.4
3,876,336	+		BWI76_RS18690	0.89	+0.3
3,876,344	-		BWI76_RS18690	0.89	-0.1
3,876,344	-		BWI76_RS18690	0.89	+1.8
3,876,344	-		BWI76_RS18690	0.89	-0.9
3,876,391	-				-2.2
3,876,422	-				+0.5
3,876,427	-				-0.1
3,876,431	+				-0.4
3,876,452	+				-0.3
3,876,452	+				-0.1
3,876,460	-				-0.4
3,876,460	-				-0.0
3,876,460	-				-2.1
3,876,460	-				+0.5
3,876,460	-				+0.1
3,876,460	-				+0.6
3,876,460	-				-0.3
3,876,462	+				-0.1
3,876,468	+				+0.9
3,876,470	-				-1.9
3,876,470	-				+0.3
3,876,470	-				+0.2
3,876,476	-				+0.2
3,876,517	+				-1.1
3,876,525	-				+1.3
3,876,525	-				-0.9
3,876,527	+				-1.6
3,876,587	-				+0.2
3,876,672	+				-2.2
3,876,834	+				-2.2
3,876,872	-		BWI76_RS18695	0.15	-1.1
3,876,892	-		BWI76_RS18695	0.17	-1.1
3,876,921	-				-0.1
3,877,107	-		BWI76_RS18695	0.48	-0.6
3,877,131	-		BWI76_RS18695	0.52	+0.1
3,877,140	-		BWI76_RS18695	0.53	-4.8
3,877,161	+		BWI76_RS18695	0.56	+0.6
3,877,161	+		BWI76_RS18695	0.56	+0.6
3,877,182	+		BWI76_RS18695	0.59	+0.9
3,877,182	+				+0.9
3,877,182	+		BWI76_RS18695	0.59	-1.9
3,877,317	-		BWI76_RS18695	0.78	-1.1
3,877,492	+				+0.6
3,877,497	+				-0.4
3,877,502	+				+0.1
3,877,502	+				-1.2
3,877,502	+				-0.6
3,877,502	+				+0.4
3,877,502	+				-1.4
3,877,510	-				+0.7
3,877,510	-				+0.0
3,877,510	-				-0.8
3,877,510	-				-0.6
3,877,510	-				+0.7