Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14500 and BWI76_RS14505 are separated by 69 nucleotides BWI76_RS14505 and BWI76_RS14510 are separated by 27 nucleotides
BWI76_RS14500: BWI76_RS14500 - MFS transporter, at 3,027,047 to 3,028,438
_RS14500
BWI76_RS14505: BWI76_RS14505 - salicylate synthase Irp9, at 3,028,508 to 3,029,818
_RS14505
BWI76_RS14510: BWI76_RS14510 - MFS transporter, at 3,029,846 to 3,031,126
_RS14510
Position (kb)
3028
3029
3030 Strain fitness (log2 ratio)
-2
-1
0
1 at 3027.675 kb on - strand, within BWI76_RS14500 at 3027.695 kb on - strand, within BWI76_RS14500 at 3027.707 kb on + strand, within BWI76_RS14500 at 3027.798 kb on - strand, within BWI76_RS14500 at 3027.852 kb on + strand, within BWI76_RS14500 at 3027.874 kb on + strand, within BWI76_RS14500 at 3028.049 kb on - strand, within BWI76_RS14500 at 3028.203 kb on - strand, within BWI76_RS14500 at 3028.251 kb on + strand, within BWI76_RS14500 at 3028.342 kb on + strand at 3028.426 kb on - strand at 3028.527 kb on - strand at 3028.527 kb on - strand at 3028.565 kb on - strand at 3028.983 kb on - strand, within BWI76_RS14505 at 3029.349 kb on - strand, within BWI76_RS14505 at 3029.734 kb on - strand at 3030.343 kb on - strand, within BWI76_RS14510 at 3030.519 kb on + strand, within BWI76_RS14510 at 3030.530 kb on + strand, within BWI76_RS14510 at 3030.653 kb on + strand, within BWI76_RS14510 at 3030.661 kb on - strand, within BWI76_RS14510
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,027,675 - BWI76_RS14500 0.45 -0.2 3,027,695 - BWI76_RS14500 0.47 +1.0 3,027,707 + BWI76_RS14500 0.47 +0.9 3,027,798 - BWI76_RS14500 0.54 -1.7 3,027,852 + BWI76_RS14500 0.58 -0.6 3,027,874 + BWI76_RS14500 0.59 +0.8 3,028,049 - BWI76_RS14500 0.72 -0.7 3,028,203 - BWI76_RS14500 0.83 +0.9 3,028,251 + BWI76_RS14500 0.86 +0.5 3,028,342 + -0.1 3,028,426 - -0.8 3,028,527 - +0.4 3,028,527 - +0.3 3,028,565 - +0.3 3,028,983 - BWI76_RS14505 0.36 +0.4 3,029,349 - BWI76_RS14505 0.64 -2.3 3,029,734 - -0.0 3,030,343 - BWI76_RS14510 0.39 +1.4 3,030,519 + BWI76_RS14510 0.53 -0.0 3,030,530 + BWI76_RS14510 0.53 -0.7 3,030,653 + BWI76_RS14510 0.63 +1.4 3,030,661 - BWI76_RS14510 0.64 +0.9
Or see this region's nucleotide sequence