Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12235

Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
2,556,576	+				-2.7
2,556,576	+				+0.1
2,556,579	+				+0.6
2,556,579	+				+1.5
2,556,589	+				-2.7
2,556,589	+				-1.4
2,556,591	-				+0.3
2,556,591	-				-1.3
2,556,592	-				+1.5
2,556,592	-				-1.3
2,556,601	-				-1.2
2,556,621	-				-1.6
2,556,636	+				+0.1
2,556,636	+				-0.4
2,556,658	-				-0.2
2,556,662	+				+2.7
2,556,663	-				-0.6
2,556,686	-				-1.4
2,556,767	+				+0.3
2,556,806	+				+0.5
2,556,808	+				-0.6
2,556,808	+				-2.0
2,556,808	+				-0.7
2,556,808	+				-0.1
2,556,816	-				-3.7
2,556,816	-				-0.1
2,556,840	+				+0.2
2,556,841	+				-1.1
2,556,842	+				-1.0
2,556,843	+				-1.8
2,556,843	-				-0.5
2,556,848	-				+0.1
2,556,867	-				+0.2
2,556,867	-				-0.3
2,556,868	-				-0.8
2,556,870	+				-0.1
2,556,870	+				+1.0
2,556,870	+				+1.0
2,556,870	+				-1.0
2,556,870	+				+0.6
2,556,870	+				-2.3
2,556,878	-				+0.0
2,556,878	-				-1.2
2,556,878	-				-1.0
2,556,878	-				-1.2
2,556,878	-				-0.9
2,556,879	-				-1.0
2,556,886	-				+0.2
2,556,889	-				-0.3
2,556,900	-				-0.3
2,556,907	+				+0.0
2,557,064	-		BWI76_RS12230	0.16	-3.6
2,557,081	+		BWI76_RS12230	0.23	-2.2
2,557,118	+		BWI76_RS12230	0.38	+0.2
2,557,118	+		BWI76_RS12230	0.38	-0.2
2,557,123	+		BWI76_RS12230	0.40	-3.1
2,557,126	-		BWI76_RS12230	0.41	+0.3
2,557,126	-		BWI76_RS12230	0.41	+1.1
2,557,208	-		BWI76_RS12230	0.74	-1.5
2,557,211	+		BWI76_RS12230	0.76	-0.3
2,557,216	+		BWI76_RS12230	0.78	-0.8
2,557,219	-		BWI76_RS12230	0.79	+1.5
2,557,219	-		BWI76_RS12230	0.79	-1.3
2,557,236	-		BWI76_RS12230	0.86	-2.4
2,557,248	-				+2.3
2,557,256	+				+0.7
2,557,256	+				-0.9
2,557,256	+				+0.4
2,557,291	-				-2.4
2,557,331	+				+0.4
2,557,331	+				-0.8
2,557,331	+				+0.2
2,557,339	-				-0.4
2,557,346	+				+0.0
2,557,346	+				-0.3
2,557,346	+				+0.1
2,557,346	+				-0.4
2,557,354	-				+0.8
2,557,354	-				-0.6
2,557,354	-				-0.2
2,557,436	+				-2.7
2,557,454	+				+0.5
2,557,454	+				-1.0
2,557,462	-				+0.1
2,557,462	-				-0.2
2,557,462	-				-2.5
2,557,504	+				+0.3
2,557,592	-		BWI76_RS12235	0.41	-0.8
2,557,607	+		BWI76_RS12235	0.49	-2.6
2,557,698	+				+0.2
2,558,012	-		BWI76_RS12240	0.31	-0.9
2,558,021	-		BWI76_RS12240	0.32	-0.9
2,558,146	+		BWI76_RS12240	0.44	-0.7
2,558,232	+		BWI76_RS12240	0.53	-0.8
2,558,335	-		BWI76_RS12240	0.63	-1.5
2,558,356	-		BWI76_RS12240	0.65	-0.4
2,558,412	-		BWI76_RS12240	0.71	-1.6
2,558,594	+		BWI76_RS12240	0.89	+0.7
2,558,687	+				-0.2