Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06465 and BWI76_RS06470 are separated by 45 nucleotides BWI76_RS06470 and BWI76_RS06475 are separated by 295 nucleotides BWI76_RS06475 and BWI76_RS06480 are separated by 11 nucleotides BWI76_RS06480 and BWI76_RS06485 overlap by 1 nucleotides BWI76_RS06485 and BWI76_RS06490 overlap by 11 nucleotides
BWI76_RS06465: BWI76_RS06465 - IclR family transcriptional regulator, at 1,359,105 to 1,359,863
_RS06465
BWI76_RS06470: BWI76_RS06470 - hypothetical protein, at 1,359,909 to 1,360,241
_RS06470
BWI76_RS06475: BWI76_RS06475 - protoheme IX farnesyltransferase, at 1,360,537 to 1,361,424
_RS06475
BWI76_RS06480: BWI76_RS06480 - cytochrome o ubiquinol oxidase subunit IV, at 1,361,436 to 1,361,765
_RS06480
BWI76_RS06485: BWI76_RS06485 - cytochrome o ubiquinol oxidase subunit III, at 1,361,765 to 1,362,376
_RS06485
BWI76_RS06490: BWI76_RS06490 - cytochrome ubiquinol oxidase subunit I, at 1,362,366 to 1,364,357
_RS06490
Position (kb) 1360
1361
1362 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1360.033 kb on - strand, within BWI76_RS06470 at 1360.147 kb on + strand, within BWI76_RS06470 at 1360.190 kb on + strand, within BWI76_RS06470 at 1360.277 kb on + strand at 1360.277 kb on + strand at 1360.277 kb on + strand at 1360.287 kb on - strand at 1360.287 kb on - strand at 1360.305 kb on - strand at 1360.305 kb on - strand at 1360.313 kb on - strand at 1360.546 kb on - strand at 1360.575 kb on + strand at 1360.842 kb on + strand, within BWI76_RS06475 at 1361.081 kb on - strand, within BWI76_RS06475 at 1361.591 kb on - strand, within BWI76_RS06480 at 1361.856 kb on - strand, within BWI76_RS06485 at 1361.946 kb on + strand, within BWI76_RS06485
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,360,033 - BWI76_RS06470 0.37 +0.4 1,360,147 + BWI76_RS06470 0.71 -0.1 1,360,190 + BWI76_RS06470 0.84 +0.9 1,360,277 + +1.1 1,360,277 + +1.2 1,360,277 + -0.7 1,360,287 - +0.1 1,360,287 - +0.1 1,360,305 - +0.6 1,360,305 - +0.5 1,360,313 - +0.0 1,360,546 - +0.4 1,360,575 + +0.6 1,360,842 + BWI76_RS06475 0.34 -0.7 1,361,081 - BWI76_RS06475 0.61 -0.9 1,361,591 - BWI76_RS06480 0.47 +2.2 1,361,856 - BWI76_RS06485 0.15 -1.1 1,361,946 + BWI76_RS06485 0.30 -1.8
Or see this region's nucleotide sequence