Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03305 and BWI76_RS03310 are separated by 24 nucleotides BWI76_RS03310 and BWI76_RS03315 are separated by 186 nucleotides BWI76_RS03315 and BWI76_RS03320 are separated by 56 nucleotides
BWI76_RS03305: BWI76_RS03305 - hypothetical protein, at 681,094 to 682,334
_RS03305
BWI76_RS03310: BWI76_RS03310 - AraC family transcriptional regulator, at 682,359 to 682,946
_RS03310
BWI76_RS03315: BWI76_RS03315 - clavaldehyde dehydrogenase, at 683,133 to 683,900
_RS03315
BWI76_RS03320: BWI76_RS03320 - alcohol dehydrogenase, at 683,957 to 685,015
_RS03320
Position (kb) 683
684 Strain fitness (log2 ratio) -1
0
1
2 at 682.401 kb on - strand at 682.457 kb on + strand, within BWI76_RS03310 at 682.462 kb on + strand, within BWI76_RS03310 at 682.660 kb on + strand, within BWI76_RS03310 at 682.744 kb on - strand, within BWI76_RS03310 at 682.776 kb on + strand, within BWI76_RS03310 at 682.943 kb on + strand at 683.035 kb on + strand at 683.180 kb on - strand at 683.424 kb on - strand, within BWI76_RS03315 at 683.497 kb on + strand at 683.548 kb on + strand, within BWI76_RS03315 at 683.554 kb on + strand, within BWI76_RS03315 at 683.562 kb on - strand, within BWI76_RS03315 at 683.562 kb on - strand, within BWI76_RS03315 at 683.844 kb on + strand at 683.934 kb on + strand at 683.947 kb on + strand at 683.953 kb on - strand at 683.965 kb on - strand at 683.981 kb on - strand at 684.000 kb on - strand at 684.000 kb on - strand at 684.086 kb on - strand, within BWI76_RS03320 at 684.104 kb on + strand, within BWI76_RS03320 at 684.114 kb on + strand, within BWI76_RS03320 at 684.130 kb on + strand, within BWI76_RS03320 at 684.159 kb on + strand, within BWI76_RS03320 at 684.196 kb on + strand, within BWI76_RS03320 at 684.196 kb on + strand, within BWI76_RS03320 at 684.396 kb on + strand at 684.431 kb on + strand, within BWI76_RS03320 at 684.461 kb on + strand, within BWI76_RS03320 at 684.492 kb on + strand, within BWI76_RS03320 at 684.510 kb on + strand, within BWI76_RS03320 at 684.519 kb on - strand, within BWI76_RS03320 at 684.546 kb on + strand, within BWI76_RS03320 at 684.566 kb on - strand, within BWI76_RS03320 at 684.589 kb on + strand, within BWI76_RS03320 at 684.597 kb on + strand, within BWI76_RS03320 at 684.606 kb on - strand, within BWI76_RS03320 at 684.609 kb on + strand, within BWI76_RS03320 at 684.708 kb on + strand, within BWI76_RS03320 at 684.712 kb on + strand, within BWI76_RS03320 at 684.752 kb on + strand, within BWI76_RS03320 at 684.827 kb on + strand, within BWI76_RS03320 at 684.833 kb on - strand, within BWI76_RS03320
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 682,401 - +0.5 682,457 + BWI76_RS03310 0.17 +0.8 682,462 + BWI76_RS03310 0.18 +0.6 682,660 + BWI76_RS03310 0.51 +0.7 682,744 - BWI76_RS03310 0.65 +1.5 682,776 + BWI76_RS03310 0.71 +0.0 682,943 + +1.1 683,035 + +0.1 683,180 - +0.3 683,424 - BWI76_RS03315 0.38 +0.6 683,497 + -0.9 683,548 + BWI76_RS03315 0.54 -0.2 683,554 + BWI76_RS03315 0.55 +2.0 683,562 - BWI76_RS03315 0.56 +1.0 683,562 - BWI76_RS03315 0.56 +0.2 683,844 + +0.2 683,934 + -1.5 683,947 + -1.4 683,953 - +0.2 683,965 - -1.7 683,981 - +1.1 684,000 - -1.0 684,000 - +1.3 684,086 - BWI76_RS03320 0.12 +1.1 684,104 + BWI76_RS03320 0.14 +1.3 684,114 + BWI76_RS03320 0.15 -0.0 684,130 + BWI76_RS03320 0.16 +0.5 684,159 + BWI76_RS03320 0.19 -0.2 684,196 + BWI76_RS03320 0.23 -0.6 684,196 + BWI76_RS03320 0.23 -0.5 684,396 + +1.1 684,431 + BWI76_RS03320 0.45 +0.6 684,461 + BWI76_RS03320 0.48 -0.2 684,492 + BWI76_RS03320 0.51 +1.1 684,510 + BWI76_RS03320 0.52 +0.1 684,519 - BWI76_RS03320 0.53 +1.5 684,546 + BWI76_RS03320 0.56 +0.1 684,566 - BWI76_RS03320 0.58 -0.4 684,589 + BWI76_RS03320 0.60 +0.5 684,597 + BWI76_RS03320 0.60 +0.3 684,606 - BWI76_RS03320 0.61 -0.5 684,609 + BWI76_RS03320 0.62 +1.6 684,708 + BWI76_RS03320 0.71 -0.6 684,712 + BWI76_RS03320 0.71 +0.4 684,752 + BWI76_RS03320 0.75 -0.3 684,827 + BWI76_RS03320 0.82 +0.9 684,833 - BWI76_RS03320 0.83 +1.1
Or see this region's nucleotide sequence