Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00805 and BWI76_RS00810 are separated by 132 nucleotides BWI76_RS00810 and BWI76_RS00815 are separated by 138 nucleotides
BWI76_RS00805: BWI76_RS00805 - 5,10-methylenetetrahydrofolate reductase, at 164,983 to 165,870
_RS00805
BWI76_RS00810: BWI76_RS00810 - DeoR family transcriptional regulator, at 166,003 to 166,752
_RS00810
BWI76_RS00815: BWI76_RS00815 - glycerol dehydrogenase, at 166,891 to 167,994
_RS00815
Position (kb) 166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.056 kb on - strand at 165.139 kb on - strand, within BWI76_RS00805 at 165.252 kb on - strand, within BWI76_RS00805 at 165.364 kb on - strand, within BWI76_RS00805 at 165.492 kb on + strand, within BWI76_RS00805 at 165.803 kb on + strand at 165.808 kb on + strand at 165.811 kb on - strand at 165.816 kb on - strand at 165.823 kb on + strand at 165.823 kb on + strand at 165.848 kb on + strand at 165.853 kb on + strand at 165.880 kb on + strand at 165.914 kb on + strand at 166.001 kb on + strand at 166.009 kb on - strand at 166.009 kb on - strand at 166.068 kb on - strand at 166.095 kb on + strand, within BWI76_RS00810 at 166.204 kb on - strand, within BWI76_RS00810 at 166.254 kb on + strand, within BWI76_RS00810 at 166.262 kb on - strand, within BWI76_RS00810 at 166.293 kb on - strand, within BWI76_RS00810 at 166.346 kb on - strand, within BWI76_RS00810 at 166.447 kb on - strand, within BWI76_RS00810 at 166.704 kb on + strand at 166.704 kb on + strand at 166.826 kb on + strand at 166.827 kb on + strand at 166.954 kb on - strand at 166.954 kb on - strand at 167.100 kb on + strand, within BWI76_RS00815 at 167.207 kb on + strand, within BWI76_RS00815 at 167.221 kb on + strand, within BWI76_RS00815 at 167.285 kb on - strand, within BWI76_RS00815 at 167.510 kb on + strand, within BWI76_RS00815 at 167.640 kb on + strand, within BWI76_RS00815 at 167.735 kb on + strand, within BWI76_RS00815 at 167.743 kb on - strand, within BWI76_RS00815
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 165,056 - -0.3 165,139 - BWI76_RS00805 0.18 -1.6 165,252 - BWI76_RS00805 0.30 -1.4 165,364 - BWI76_RS00805 0.43 +0.7 165,492 + BWI76_RS00805 0.57 +1.3 165,803 + +1.8 165,808 + +1.2 165,811 - -1.0 165,816 - -0.5 165,823 + +1.0 165,823 + +0.8 165,848 + -0.8 165,853 + +0.1 165,880 + -1.4 165,914 + +0.2 166,001 + -0.6 166,009 - +0.2 166,009 - +0.1 166,068 - +0.4 166,095 + BWI76_RS00810 0.12 +0.2 166,204 - BWI76_RS00810 0.27 -0.4 166,254 + BWI76_RS00810 0.33 +1.6 166,262 - BWI76_RS00810 0.35 +0.3 166,293 - BWI76_RS00810 0.39 +2.1 166,346 - BWI76_RS00810 0.46 -0.1 166,447 - BWI76_RS00810 0.59 +0.8 166,704 + -1.3 166,704 + +0.1 166,826 + -0.4 166,827 + +1.3 166,954 - -0.8 166,954 - +0.2 167,100 + BWI76_RS00815 0.19 +0.3 167,207 + BWI76_RS00815 0.29 +0.8 167,221 + BWI76_RS00815 0.30 -0.2 167,285 - BWI76_RS00815 0.36 -0.7 167,510 + BWI76_RS00815 0.56 -0.8 167,640 + BWI76_RS00815 0.68 -2.8 167,735 + BWI76_RS00815 0.76 +0.7 167,743 - BWI76_RS00815 0.77 +2.1
Or see this region's nucleotide sequence