Experiment: Maltitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03248 and SMc03249 overlap by 4 nucleotides SMc03249 and SMc03751 are separated by 76 nucleotides SMc03751 and SMc03250 overlap by 20 nucleotides SMc03250 and SMc03251 are separated by 940 nucleotides
SMc03248: SMc03248 - transposase, at 3,361,899 to 3,362,729
SMc03248
SMc03249: SMc03249 - hypothetical protein, at 3,362,726 to 3,362,983
SMc03249
SMc03751: SMc03751 - hypothetical protein, at 3,363,060 to 3,363,509
SMc03751
SMc03250: SMc03250 - hypothetical protein, at 3,363,490 to 3,363,951
SMc03250
SMc03251: SMc03251 - hypothetical protein, at 3,364,892 to 3,365,899
SMc03251
Position (kb)
3363
3364 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3362.654 kb on - strand at 3362.654 kb on - strand at 3362.814 kb on - strand, within SMc03249 at 3362.814 kb on - strand at 3363.061 kb on + strand at 3363.061 kb on + strand at 3363.062 kb on - strand at 3363.062 kb on - strand at 3363.089 kb on + strand at 3363.090 kb on - strand at 3363.173 kb on + strand, within SMc03751 at 3363.478 kb on + strand at 3363.511 kb on - strand at 3363.852 kb on + strand, within SMc03250 at 3363.853 kb on - strand, within SMc03250 at 3363.853 kb on - strand, within SMc03250 at 3364.018 kb on + strand at 3364.019 kb on - strand at 3364.019 kb on - strand at 3364.166 kb on - strand at 3364.166 kb on - strand at 3364.335 kb on + strand at 3364.335 kb on + strand at 3364.391 kb on - strand at 3364.549 kb on + strand at 3364.550 kb on - strand at 3364.550 kb on - strand at 3364.553 kb on - strand at 3364.652 kb on + strand at 3364.653 kb on - strand at 3364.701 kb on + strand at 3364.866 kb on + strand at 3364.902 kb on + strand at 3364.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Maltitol (C) remove 3,362,654 - -0.0 3,362,654 - +0.2 3,362,814 - SMc03249 0.34 +0.1 3,362,814 - +1.0 3,363,061 + -0.1 3,363,061 + -0.3 3,363,062 - -0.0 3,363,062 - -0.0 3,363,089 + +0.2 3,363,090 - -0.1 3,363,173 + SMc03751 0.25 -0.1 3,363,478 + -0.1 3,363,511 - +0.4 3,363,852 + SMc03250 0.78 -0.4 3,363,853 - SMc03250 0.79 -1.1 3,363,853 - SMc03250 0.79 -0.6 3,364,018 + +0.0 3,364,019 - -0.2 3,364,019 - +0.6 3,364,166 - +0.1 3,364,166 - +0.2 3,364,335 + +0.1 3,364,335 + -0.0 3,364,391 - +0.6 3,364,549 + -0.3 3,364,550 - +0.6 3,364,550 - +0.5 3,364,553 - -0.5 3,364,652 + -0.6 3,364,653 - +0.5 3,364,701 + +1.3 3,364,866 + -3.1 3,364,902 + +1.9 3,364,903 - -0.1
Or see this region's nucleotide sequence