Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20827

Experiment: Maltitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20825 and SM_b20826 are separated by 67 nucleotidesSM_b20826 and SM_b20827 are separated by 223 nucleotidesSM_b20827 and SM_b20828 are separated by 222 nucleotidesSM_b20828 and SM_b21663 overlap by 4 nucleotides SM_b20825: SM_b20825 - acetyltransferase, cysElacA/lpxA/nodL family protein, at 616,023 to 616,793 _b20825 SM_b20826: SM_b20826 - hypothetical protein, at 616,861 to 617,394 _b20826 SM_b20827: SM_b20827 - transposase, at 617,618 to 618,205 _b20827 SM_b20828: SM_b20828 - hypothetical protein, at 618,428 to 618,703 _b20828 SM_b21663: SM_b21663 - hypothetical protein, at 618,700 to 619,116 _b21663 Position (kb) 617 618 619Strain fitness (log2 ratio) -3 -2 -1 0 1at 616.697 kb on + strand, within SM_b20825at 616.698 kb on - strand, within SM_b20825at 616.740 kb on + strandat 616.763 kb on + strandat 616.858 kb on + strandat 616.859 kb on - strandat 616.859 kb on - strandat 616.990 kb on + strand, within SM_b20826at 616.990 kb on + strand, within SM_b20826at 616.990 kb on + strand, within SM_b20826at 616.990 kb on + strand, within SM_b20826at 617.035 kb on + strand, within SM_b20826at 617.035 kb on + strand, within SM_b20826at 617.054 kb on + strand, within SM_b20826at 617.054 kb on + strand, within SM_b20826at 617.115 kb on + strand, within SM_b20826at 617.116 kb on - strand, within SM_b20826at 617.302 kb on + strand, within SM_b20826at 617.302 kb on + strand, within SM_b20826at 617.303 kb on - strand, within SM_b20826at 617.323 kb on + strand, within SM_b20826at 617.323 kb on + strand, within SM_b20826at 617.324 kb on - strand, within SM_b20826at 617.328 kb on - strand, within SM_b20826at 617.328 kb on - strand, within SM_b20826at 617.403 kb on + strandat 617.403 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.457 kb on + strandat 617.549 kb on + strandat 617.549 kb on + strandat 617.660 kb on + strandat 617.660 kb on + strandat 617.661 kb on - strandat 617.669 kb on + strandat 617.670 kb on - strandat 617.670 kb on - strandat 617.949 kb on - strand, within SM_b20827at 617.949 kb on - strandat 617.963 kb on + strand, within SM_b20827at 617.964 kb on - strand, within SM_b20827at 618.128 kb on + strand, within SM_b20827at 618.129 kb on - strand, within SM_b20827at 618.196 kb on - strandat 618.198 kb on + strandat 618.198 kb on + strandat 618.198 kb on + strandat 618.199 kb on - strandat 618.204 kb on - strandat 618.204 kb on - strandat 618.354 kb on + strandat 618.355 kb on - strandat 618.394 kb on - strandat 618.479 kb on + strand, within SM_b20828at 618.479 kb on + strand, within SM_b20828at 618.479 kb on + strand, within SM_b20828at 618.491 kb on + strand, within SM_b20828at 618.492 kb on - strand, within SM_b20828at 618.492 kb on - strand, within SM_b20828at 618.492 kb on - strand, within SM_b20828at 618.492 kb on - strand, within SM_b20828at 618.537 kb on - strand, within SM_b20828at 618.789 kb on + strand, within SM_b21663at 618.941 kb on + strand, within SM_b21663at 618.954 kb on - strand, within SM_b21663at 619.084 kb on + strandat 619.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol (C)
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616,697 + SM_b20825 0.87 +0.7
616,698 - SM_b20825 0.88 -1.5
616,740 + +0.8
616,763 + -0.6
616,858 + +0.3
616,859 - +0.4
616,859 - -1.5
616,990 + SM_b20826 0.24 -0.5
616,990 + SM_b20826 0.24 -1.3
616,990 + SM_b20826 0.24 -0.7
616,990 + SM_b20826 0.24 +0.1
617,035 + SM_b20826 0.33 -1.0
617,035 + SM_b20826 0.33 -0.7
617,054 + SM_b20826 0.36 -0.1
617,054 + SM_b20826 0.36 -0.3
617,115 + SM_b20826 0.48 +0.5
617,116 - SM_b20826 0.48 -0.1
617,302 + SM_b20826 0.83 +0.4
617,302 + SM_b20826 0.83 +0.4
617,303 - SM_b20826 0.83 +0.3
617,323 + SM_b20826 0.87 -0.1
617,323 + SM_b20826 0.87 +0.3
617,324 - SM_b20826 0.87 -0.0
617,328 - SM_b20826 0.87 +0.2
617,328 - SM_b20826 0.87 -0.4
617,403 + -0.1
617,403 + +0.4
617,454 + -0.3
617,454 + +0.8
617,454 + +0.2
617,454 + -0.2
617,454 + -0.3
617,454 + +1.5
617,457 + -0.0
617,549 + -0.4
617,549 + +0.1
617,660 + -0.0
617,660 + +0.3
617,661 - -0.1
617,669 + +0.1
617,670 - -0.3
617,670 - -0.5
617,949 - SM_b20827 0.56 -0.8
617,949 - -0.5
617,963 + SM_b20827 0.59 -0.8
617,964 - SM_b20827 0.59 -2.8
618,128 + SM_b20827 0.87 -0.2
618,129 - SM_b20827 0.87 -0.1
618,196 - -0.1
618,198 + +0.2
618,198 + +0.1
618,198 + -1.3
618,199 - -0.1
618,204 - +0.1
618,204 - -0.0
618,354 + +0.2
618,355 - +0.9
618,394 - -1.4
618,479 + SM_b20828 0.18 -0.6
618,479 + SM_b20828 0.18 -0.1
618,479 + SM_b20828 0.18 +0.3
618,491 + SM_b20828 0.23 -0.0
618,492 - SM_b20828 0.23 +0.4
618,492 - SM_b20828 0.23 -1.2
618,492 - SM_b20828 0.23 -1.5
618,492 - SM_b20828 0.23 -0.1
618,537 - SM_b20828 0.39 -0.6
618,789 + SM_b21663 0.21 -0.0
618,941 + SM_b21663 0.58 -0.1
618,954 - SM_b21663 0.61 -0.8
619,084 + -0.8
619,085 - +0.8

Or see this region's nucleotide sequence