Experiment: Maltitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20094 and SM_b20095 are separated by 24 nucleotides SM_b20095 and SM_b20096 are separated by 28 nucleotides SM_b20096 and SM_b20097 are separated by 1 nucleotides
SM_b20094: SM_b20094 - phospholipase, at 101,410 to 103,182
_b20094
SM_b20095: SM_b20095 - pyruvate oxidase, at 103,207 to 105,024
_b20095
SM_b20096: SM_b20096 - hypothetical protein, at 105,053 to 105,493
_b20096
SM_b20097: SM_b20097 - oxidoreductase, at 105,495 to 106,724
_b20097
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.339 kb on + strand, within SM_b20094 at 102.787 kb on + strand, within SM_b20094 at 102.834 kb on + strand, within SM_b20094 at 102.835 kb on - strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.851 kb on + strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.852 kb on - strand, within SM_b20094 at 102.929 kb on - strand, within SM_b20094 at 103.001 kb on - strand, within SM_b20094 at 103.007 kb on + strand at 103.007 kb on + strand at 103.141 kb on + strand at 103.141 kb on + strand at 103.141 kb on + strand at 103.142 kb on - strand at 103.142 kb on - strand at 103.207 kb on - strand at 103.207 kb on - strand at 103.207 kb on - strand at 103.463 kb on - strand, within SM_b20095 at 103.513 kb on + strand, within SM_b20095 at 103.514 kb on - strand, within SM_b20095 at 103.585 kb on + strand, within SM_b20095 at 103.982 kb on + strand, within SM_b20095 at 104.056 kb on + strand, within SM_b20095 at 104.058 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.352 kb on + strand, within SM_b20095 at 104.470 kb on + strand, within SM_b20095 at 104.470 kb on + strand, within SM_b20095 at 104.470 kb on + strand, within SM_b20095 at 104.471 kb on - strand, within SM_b20095 at 104.471 kb on - strand, within SM_b20095 at 104.471 kb on - strand, within SM_b20095 at 104.512 kb on + strand, within SM_b20095 at 105.022 kb on + strand at 105.022 kb on + strand at 105.080 kb on - strand at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.113 kb on - strand, within SM_b20096 at 105.146 kb on + strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.383 kb on + strand, within SM_b20096 at 105.383 kb on + strand, within SM_b20096 at 105.479 kb on + strand at 105.480 kb on - strand at 105.491 kb on + strand at 105.492 kb on - strand at 105.518 kb on + strand at 105.519 kb on - strand at 105.519 kb on - strand at 105.740 kb on - strand, within SM_b20097 at 105.740 kb on - strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097
Per-strain Table
Position Strand Gene LocusTag Fraction Maltitol (C) remove 102,339 + SM_b20094 0.52 +0.4 102,787 + SM_b20094 0.78 -0.8 102,834 + SM_b20094 0.80 -1.6 102,835 - SM_b20094 0.80 -0.2 102,851 + SM_b20094 0.81 +0.5 102,851 + SM_b20094 0.81 +0.0 102,851 + SM_b20094 0.81 -0.5 102,851 + SM_b20094 0.81 -0.4 102,851 + SM_b20094 0.81 +0.4 102,851 + SM_b20094 0.81 +0.0 102,851 + SM_b20094 0.81 -0.6 102,851 + SM_b20094 0.81 +0.3 102,852 - SM_b20094 0.81 +0.6 102,852 - SM_b20094 0.81 -0.1 102,852 - SM_b20094 0.81 +0.2 102,852 - SM_b20094 0.81 +1.0 102,852 - SM_b20094 0.81 +0.2 102,852 - SM_b20094 0.81 +0.6 102,852 - SM_b20094 0.81 -0.0 102,852 - SM_b20094 0.81 -1.2 102,852 - SM_b20094 0.81 -1.4 102,929 - SM_b20094 0.86 +0.3 103,001 - SM_b20094 0.90 -0.4 103,007 + -0.0 103,007 + -0.3 103,141 + +0.1 103,141 + +0.3 103,141 + +0.2 103,142 - -0.8 103,142 - +0.5 103,207 - -0.5 103,207 - -0.2 103,207 - -2.2 103,463 - SM_b20095 0.14 +2.3 103,513 + SM_b20095 0.17 +0.8 103,514 - SM_b20095 0.17 +0.2 103,585 + SM_b20095 0.21 +0.1 103,982 + SM_b20095 0.43 -0.8 104,056 + SM_b20095 0.47 -0.1 104,058 + SM_b20095 0.47 +0.5 104,065 + SM_b20095 0.47 +0.3 104,065 + SM_b20095 0.47 +0.6 104,065 + SM_b20095 0.47 +0.1 104,352 + SM_b20095 0.63 +1.3 104,470 + SM_b20095 0.69 -0.1 104,470 + SM_b20095 0.69 -0.0 104,470 + SM_b20095 0.69 +1.1 104,471 - SM_b20095 0.70 -0.9 104,471 - SM_b20095 0.70 +0.1 104,471 - SM_b20095 0.70 +0.2 104,512 + SM_b20095 0.72 -0.4 105,022 + -0.7 105,022 + +1.8 105,080 - -0.2 105,112 + SM_b20096 0.13 -0.5 105,112 + SM_b20096 0.13 +0.9 105,112 + SM_b20096 0.13 -0.5 105,112 + SM_b20096 0.13 +0.7 105,112 + SM_b20096 0.13 +1.0 105,113 - SM_b20096 0.14 -1.6 105,146 + SM_b20096 0.21 -0.6 105,147 - SM_b20096 0.21 +0.4 105,147 - SM_b20096 0.21 +0.2 105,147 - SM_b20096 0.21 -0.1 105,147 - SM_b20096 0.21 +0.3 105,383 + SM_b20096 0.75 -1.4 105,383 + SM_b20096 0.75 -0.2 105,479 + -0.1 105,480 - -0.3 105,491 + -1.3 105,492 - +0.2 105,518 + -0.1 105,519 - +1.1 105,519 - -0.4 105,740 - SM_b20097 0.20 +0.0 105,740 - SM_b20097 0.20 -0.5 105,970 + SM_b20097 0.39 +0.1 105,970 + SM_b20097 0.39 +0.5 105,970 + SM_b20097 0.39 -0.2 105,970 + SM_b20097 0.39 +0.4 105,971 - SM_b20097 0.39 +0.8 105,971 - SM_b20097 0.39 +0.0 105,971 - SM_b20097 0.39 +0.2
Or see this region's nucleotide sequence