Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22835 and BWI76_RS22840 overlap by 35 nucleotides BWI76_RS22840 and BWI76_RS22845 are separated by 399 nucleotides BWI76_RS22845 and BWI76_RS22850 are separated by 2 nucleotides
BWI76_RS22835: BWI76_RS22835 - MFS transporter, at 4,765,256 to 4,766,614
_RS22835
BWI76_RS22840: BWI76_RS22840 - transposase, at 4,766,580 to 4,766,699
_RS22840
BWI76_RS22845: BWI76_RS22845 - flavodoxin, at 4,767,099 to 4,767,542
_RS22845
BWI76_RS22850: BWI76_RS22850 - tRNA pseudouridine synthase TruC, at 4,767,545 to 4,768,339
_RS22850
Position (kb)
4766
4767 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4765.785 kb on + strand, within BWI76_RS22835 at 4765.866 kb on + strand, within BWI76_RS22835 at 4765.938 kb on - strand, within BWI76_RS22835 at 4766.094 kb on - strand, within BWI76_RS22835 at 4766.145 kb on + strand, within BWI76_RS22835 at 4766.169 kb on + strand, within BWI76_RS22835 at 4766.495 kb on + strand at 4766.527 kb on - strand at 4766.553 kb on + strand at 4766.674 kb on - strand, within BWI76_RS22840 at 4766.769 kb on + strand at 4766.791 kb on + strand at 4766.832 kb on + strand at 4766.892 kb on - strand at 4766.995 kb on - strand at 4767.042 kb on + strand at 4767.083 kb on - strand at 4767.118 kb on - strand at 4767.212 kb on - strand, within BWI76_RS22845 at 4767.252 kb on - strand, within BWI76_RS22845 at 4767.291 kb on + strand, within BWI76_RS22845 at 4767.299 kb on - strand, within BWI76_RS22845 at 4767.335 kb on + strand, within BWI76_RS22845 at 4767.408 kb on + strand, within BWI76_RS22845
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,765,785 + BWI76_RS22835 0.39 -2.4 4,765,866 + BWI76_RS22835 0.45 -1.0 4,765,938 - BWI76_RS22835 0.50 +0.6 4,766,094 - BWI76_RS22835 0.62 +0.0 4,766,145 + BWI76_RS22835 0.65 -0.8 4,766,169 + BWI76_RS22835 0.67 +1.0 4,766,495 + +0.8 4,766,527 - -2.2 4,766,553 + +0.2 4,766,674 - BWI76_RS22840 0.78 -1.8 4,766,769 + +0.4 4,766,791 + -2.8 4,766,832 + -2.5 4,766,892 - -2.0 4,766,995 - +0.5 4,767,042 + +0.9 4,767,083 - -1.2 4,767,118 - +0.4 4,767,212 - BWI76_RS22845 0.25 +0.8 4,767,252 - BWI76_RS22845 0.34 -0.1 4,767,291 + BWI76_RS22845 0.43 -1.5 4,767,299 - BWI76_RS22845 0.45 +0.3 4,767,335 + BWI76_RS22845 0.53 +0.5 4,767,408 + BWI76_RS22845 0.70 +0.3
Or see this region's nucleotide sequence