Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21935 and BWI76_RS21940 are separated by 64 nucleotides BWI76_RS21940 and BWI76_RS21945 are separated by 144 nucleotides BWI76_RS21945 and BWI76_RS21950 are separated by 39 nucleotides BWI76_RS21950 and BWI76_RS21955 are separated by 35 nucleotides
BWI76_RS21935: BWI76_RS21935 - MFS transporter, at 4,582,309 to 4,583,502
_RS21935
BWI76_RS21940: BWI76_RS21940 - SDR family oxidoreductase, at 4,583,567 to 4,584,343
_RS21940
BWI76_RS21945: BWI76_RS21945 - LysR family transcriptional regulator, at 4,584,488 to 4,585,408
_RS21945
BWI76_RS21950: BWI76_RS21950 - prephenate dehydratase/arogenate dehydratase, at 4,585,448 to 4,586,221
_RS21950
BWI76_RS21955: BWI76_RS21955 - transferase, at 4,586,257 to 4,587,051
_RS21955
Position (kb) 4584
4585
4586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4583.652 kb on + strand at 4583.857 kb on - strand, within BWI76_RS21940 at 4583.974 kb on - strand, within BWI76_RS21940 at 4584.116 kb on - strand, within BWI76_RS21940 at 4584.350 kb on + strand at 4584.376 kb on + strand at 4584.386 kb on + strand at 4584.389 kb on - strand at 4584.394 kb on - strand at 4584.394 kb on - strand at 4584.614 kb on + strand, within BWI76_RS21945 at 4584.730 kb on + strand at 4584.738 kb on - strand, within BWI76_RS21945 at 4585.201 kb on - strand, within BWI76_RS21945 at 4585.327 kb on + strand at 4585.575 kb on - strand, within BWI76_RS21950 at 4585.575 kb on - strand, within BWI76_RS21950 at 4585.613 kb on + strand, within BWI76_RS21950 at 4585.613 kb on + strand, within BWI76_RS21950 at 4585.655 kb on - strand, within BWI76_RS21950 at 4585.695 kb on + strand, within BWI76_RS21950 at 4585.703 kb on + strand, within BWI76_RS21950 at 4585.781 kb on - strand, within BWI76_RS21950 at 4585.927 kb on + strand, within BWI76_RS21950 at 4585.982 kb on - strand, within BWI76_RS21950 at 4586.011 kb on + strand, within BWI76_RS21950 at 4586.019 kb on - strand, within BWI76_RS21950 at 4586.019 kb on - strand, within BWI76_RS21950 at 4586.019 kb on - strand, within BWI76_RS21950 at 4586.056 kb on - strand, within BWI76_RS21950 at 4586.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,583,652 + +0.7 4,583,857 - BWI76_RS21940 0.37 +1.1 4,583,974 - BWI76_RS21940 0.52 -0.9 4,584,116 - BWI76_RS21940 0.71 -3.4 4,584,350 + +0.4 4,584,376 + -2.1 4,584,386 + +0.3 4,584,389 - +0.3 4,584,394 - +0.1 4,584,394 - +0.2 4,584,614 + BWI76_RS21945 0.14 +0.4 4,584,730 + +4.4 4,584,738 - BWI76_RS21945 0.27 +3.4 4,585,201 - BWI76_RS21945 0.77 -0.1 4,585,327 + +0.8 4,585,575 - BWI76_RS21950 0.16 +0.3 4,585,575 - BWI76_RS21950 0.16 +2.0 4,585,613 + BWI76_RS21950 0.21 -0.0 4,585,613 + BWI76_RS21950 0.21 -1.5 4,585,655 - BWI76_RS21950 0.27 +0.7 4,585,695 + BWI76_RS21950 0.32 +0.3 4,585,703 + BWI76_RS21950 0.33 +0.2 4,585,781 - BWI76_RS21950 0.43 +0.6 4,585,927 + BWI76_RS21950 0.62 +0.3 4,585,982 - BWI76_RS21950 0.69 +0.8 4,586,011 + BWI76_RS21950 0.73 +0.2 4,586,019 - BWI76_RS21950 0.74 +0.7 4,586,019 - BWI76_RS21950 0.74 +0.5 4,586,019 - BWI76_RS21950 0.74 -1.0 4,586,056 - BWI76_RS21950 0.79 +1.7 4,586,309 - -0.7
Or see this region's nucleotide sequence