Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18565

Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18555 and BWI76_RS18560 are separated by 194 nucleotidesBWI76_RS18560 and BWI76_RS18565 are separated by 53 nucleotidesBWI76_RS18565 and BWI76_RS18570 are separated by 0 nucleotidesBWI76_RS18570 and BWI76_RS18575 are separated by 193 nucleotidesBWI76_RS18575 and BWI76_RS18580 are separated by 4 nucleotides BWI76_RS18555: BWI76_RS18555 - MATE family multidrug exporter, at 3,850,929 to 3,852,386 _RS18555 BWI76_RS18560: BWI76_RS18560 - tRNA-Asn, at 3,852,581 to 3,852,656 _RS18560 BWI76_RS18565: BWI76_RS18565 - pemk protein, at 3,852,710 to 3,853,043 _RS18565 BWI76_RS18570: BWI76_RS18570 - hypothetical protein, at 3,853,044 to 3,853,247 _RS18570 BWI76_RS18575: BWI76_RS18575 - transcriptional regulator, at 3,853,441 to 3,853,743 _RS18575 BWI76_RS18580: BWI76_RS18580 - hypothetical protein, at 3,853,748 to 3,854,101 _RS18580 Position (kb) 3852 3853 3854Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3851.878 kb on + strand, within BWI76_RS18555at 3851.910 kb on + strand, within BWI76_RS18555at 3851.910 kb on + strand, within BWI76_RS18555at 3851.918 kb on - strand, within BWI76_RS18555at 3851.918 kb on - strand, within BWI76_RS18555at 3851.947 kb on - strand, within BWI76_RS18555at 3851.947 kb on - strand, within BWI76_RS18555at 3851.955 kb on - strand, within BWI76_RS18555at 3852.213 kb on - strand, within BWI76_RS18555at 3852.251 kb on - strandat 3852.363 kb on + strandat 3852.381 kb on + strandat 3852.381 kb on - strandat 3852.415 kb on - strandat 3852.440 kb on + strandat 3852.505 kb on + strandat 3852.870 kb on + strand, within BWI76_RS18565at 3852.971 kb on - strand, within BWI76_RS18565at 3853.049 kb on - strandat 3853.231 kb on - strandat 3853.249 kb on + strandat 3853.262 kb on - strandat 3853.346 kb on + strandat 3853.379 kb on + strandat 3853.414 kb on + strandat 3853.515 kb on - strand, within BWI76_RS18575at 3853.655 kb on - strand, within BWI76_RS18575at 3853.776 kb on - strandat 3853.805 kb on + strand, within BWI76_RS18580

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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3,851,878 + BWI76_RS18555 0.65 +0.3
3,851,910 + BWI76_RS18555 0.67 +0.9
3,851,910 + BWI76_RS18555 0.67 +1.7
3,851,918 - BWI76_RS18555 0.68 -0.3
3,851,918 - BWI76_RS18555 0.68 +1.5
3,851,947 - BWI76_RS18555 0.70 +0.4
3,851,947 - BWI76_RS18555 0.70 +0.8
3,851,955 - BWI76_RS18555 0.70 +0.3
3,852,213 - BWI76_RS18555 0.88 +0.8
3,852,251 - +2.8
3,852,363 + -0.0
3,852,381 + -0.3
3,852,381 - -1.8
3,852,415 - +0.8
3,852,440 + +1.9
3,852,505 + +0.1
3,852,870 + BWI76_RS18565 0.48 +0.4
3,852,971 - BWI76_RS18565 0.78 +3.3
3,853,049 - -0.2
3,853,231 - -1.8
3,853,249 + +0.8
3,853,262 - -0.2
3,853,346 + +0.2
3,853,379 + +0.8
3,853,414 + -1.0
3,853,515 - BWI76_RS18575 0.24 +0.5
3,853,655 - BWI76_RS18575 0.71 +3.1
3,853,776 - +0.1
3,853,805 + BWI76_RS18580 0.16 -2.9

Or see this region's nucleotide sequence