Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18555 and BWI76_RS18560 are separated by 194 nucleotides BWI76_RS18560 and BWI76_RS18565 are separated by 53 nucleotides BWI76_RS18565 and BWI76_RS18570 are separated by 0 nucleotides BWI76_RS18570 and BWI76_RS18575 are separated by 193 nucleotides BWI76_RS18575 and BWI76_RS18580 are separated by 4 nucleotides
BWI76_RS18555: BWI76_RS18555 - MATE family multidrug exporter, at 3,850,929 to 3,852,386
_RS18555
BWI76_RS18560: BWI76_RS18560 - tRNA-Asn, at 3,852,581 to 3,852,656
_RS18560
BWI76_RS18565: BWI76_RS18565 - pemk protein, at 3,852,710 to 3,853,043
_RS18565
BWI76_RS18570: BWI76_RS18570 - hypothetical protein, at 3,853,044 to 3,853,247
_RS18570
BWI76_RS18575: BWI76_RS18575 - transcriptional regulator, at 3,853,441 to 3,853,743
_RS18575
BWI76_RS18580: BWI76_RS18580 - hypothetical protein, at 3,853,748 to 3,854,101
_RS18580
Position (kb)
3852
3853
3854 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3851.878 kb on + strand, within BWI76_RS18555 at 3851.910 kb on + strand, within BWI76_RS18555 at 3851.910 kb on + strand, within BWI76_RS18555 at 3851.918 kb on - strand, within BWI76_RS18555 at 3851.918 kb on - strand, within BWI76_RS18555 at 3851.947 kb on - strand, within BWI76_RS18555 at 3851.947 kb on - strand, within BWI76_RS18555 at 3851.955 kb on - strand, within BWI76_RS18555 at 3852.213 kb on - strand, within BWI76_RS18555 at 3852.251 kb on - strand at 3852.363 kb on + strand at 3852.381 kb on + strand at 3852.381 kb on - strand at 3852.415 kb on - strand at 3852.440 kb on + strand at 3852.505 kb on + strand at 3852.870 kb on + strand, within BWI76_RS18565 at 3852.971 kb on - strand, within BWI76_RS18565 at 3853.049 kb on - strand at 3853.231 kb on - strand at 3853.249 kb on + strand at 3853.262 kb on - strand at 3853.346 kb on + strand at 3853.379 kb on + strand at 3853.414 kb on + strand at 3853.515 kb on - strand, within BWI76_RS18575 at 3853.655 kb on - strand, within BWI76_RS18575 at 3853.776 kb on - strand at 3853.805 kb on + strand, within BWI76_RS18580
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,851,878 + BWI76_RS18555 0.65 +0.3 3,851,910 + BWI76_RS18555 0.67 +0.9 3,851,910 + BWI76_RS18555 0.67 +1.7 3,851,918 - BWI76_RS18555 0.68 -0.3 3,851,918 - BWI76_RS18555 0.68 +1.5 3,851,947 - BWI76_RS18555 0.70 +0.4 3,851,947 - BWI76_RS18555 0.70 +0.8 3,851,955 - BWI76_RS18555 0.70 +0.3 3,852,213 - BWI76_RS18555 0.88 +0.8 3,852,251 - +2.8 3,852,363 + -0.0 3,852,381 + -0.3 3,852,381 - -1.8 3,852,415 - +0.8 3,852,440 + +1.9 3,852,505 + +0.1 3,852,870 + BWI76_RS18565 0.48 +0.4 3,852,971 - BWI76_RS18565 0.78 +3.3 3,853,049 - -0.2 3,853,231 - -1.8 3,853,249 + +0.8 3,853,262 - -0.2 3,853,346 + +0.2 3,853,379 + +0.8 3,853,414 + -1.0 3,853,515 - BWI76_RS18575 0.24 +0.5 3,853,655 - BWI76_RS18575 0.71 +3.1 3,853,776 - +0.1 3,853,805 + BWI76_RS18580 0.16 -2.9
Or see this region's nucleotide sequence