Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16840 and BWI76_RS16845 overlap by 7 nucleotides BWI76_RS16845 and BWI76_RS16850 overlap by 20 nucleotides BWI76_RS16850 and BWI76_RS16855 overlap by 4 nucleotides BWI76_RS16855 and BWI76_RS16860 are separated by 11 nucleotides
BWI76_RS16840: BWI76_RS16840 - ABC transporter, at 3,492,574 to 3,493,362
_RS16840
BWI76_RS16845: BWI76_RS16845 - ABC transporter permease, at 3,493,356 to 3,494,351
_RS16845
BWI76_RS16850: BWI76_RS16850 - ABC transporter periplasmic substrate-binding protein, at 3,494,332 to 3,495,369
_RS16850
BWI76_RS16855: BWI76_RS16855 - putative ABC transporter periplasmic solute-binding protein, at 3,495,366 to 3,496,340
_RS16855
BWI76_RS16860: BWI76_RS16860 - acyl-CoA dehydrogenase, at 3,496,352 to 3,497,440
_RS16860
Position (kb)
3494
3495
3496 Strain fitness (log2 ratio)
-1
0
1 at 3493.403 kb on + strand at 3493.432 kb on - strand at 3493.441 kb on + strand at 3493.480 kb on + strand, within BWI76_RS16845 at 3493.493 kb on - strand, within BWI76_RS16845 at 3493.651 kb on - strand, within BWI76_RS16845 at 3493.715 kb on - strand, within BWI76_RS16845 at 3493.903 kb on - strand, within BWI76_RS16845 at 3493.919 kb on + strand, within BWI76_RS16845 at 3494.251 kb on + strand, within BWI76_RS16845 at 3494.575 kb on - strand, within BWI76_RS16850 at 3494.662 kb on + strand, within BWI76_RS16850 at 3494.662 kb on + strand, within BWI76_RS16850 at 3495.015 kb on + strand, within BWI76_RS16850 at 3495.367 kb on - strand at 3495.387 kb on + strand at 3495.787 kb on + strand, within BWI76_RS16855 at 3496.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,493,403 + -0.5 3,493,432 - -0.8 3,493,441 + +0.1 3,493,480 + BWI76_RS16845 0.12 +0.7 3,493,493 - BWI76_RS16845 0.14 -0.3 3,493,651 - BWI76_RS16845 0.30 -1.6 3,493,715 - BWI76_RS16845 0.36 -0.6 3,493,903 - BWI76_RS16845 0.55 +0.0 3,493,919 + BWI76_RS16845 0.57 -0.3 3,494,251 + BWI76_RS16845 0.90 +1.4 3,494,575 - BWI76_RS16850 0.23 +0.8 3,494,662 + BWI76_RS16850 0.32 +0.5 3,494,662 + BWI76_RS16850 0.32 +1.7 3,495,015 + BWI76_RS16850 0.66 +0.3 3,495,367 - -0.3 3,495,387 + +0.9 3,495,787 + BWI76_RS16855 0.43 -0.9 3,496,282 - +0.9
Or see this region's nucleotide sequence