Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15080

Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
3,157,182	+		BWI76_RS15070	0.87	+1.3
3,157,252	-		BWI76_RS15070	0.89	-0.1
3,157,280	+		BWI76_RS15070	0.90	-0.3
3,157,313	+				-0.9
3,157,313	+				+0.8
3,157,313	+				-0.1
3,157,321	-				-2.3
3,157,321	-				+0.8
3,157,347	+				-0.7
3,157,355	-				+1.2
3,157,387	-				+1.2
3,157,402	-				+1.5
3,157,547	-				+0.1
3,157,767	+				-0.5
3,157,819	+				-0.7
3,157,827	+				-0.7
3,157,827	+		BWI76_RS15075	0.11	-2.8
3,157,827	+		BWI76_RS15075	0.11	-2.3
3,157,827	+		BWI76_RS15075	0.11	-0.5
3,157,827	-		BWI76_RS15075	0.11	+1.2
3,157,835	-		BWI76_RS15075	0.14	+2.2
3,157,835	-		BWI76_RS15075	0.14	+0.5
3,157,835	-		BWI76_RS15075	0.14	+1.6
3,158,009	-		BWI76_RS15075	0.90	+0.5
3,158,012	+				+0.5
3,158,033	+				+0.7
3,158,033	+				+0.1
3,158,093	+				+0.7
3,158,154	-				-0.1
3,158,197	-		BWI76_RS15080	0.11	+0.6
3,158,268	-		BWI76_RS15080	0.15	-1.9
3,158,270	+		BWI76_RS15080	0.15	+0.9
3,158,366	+		BWI76_RS15080	0.22	+0.9
3,158,371	+		BWI76_RS15080	0.22	+0.6
3,158,471	+		BWI76_RS15080	0.29	-0.0
3,158,476	+		BWI76_RS15080	0.29	+0.9
3,158,476	+		BWI76_RS15080	0.29	+1.0
3,158,535	-				-0.7
3,158,567	+		BWI76_RS15080	0.35	-3.6
3,158,575	-		BWI76_RS15080	0.36	+1.1
3,158,590	-		BWI76_RS15080	0.36	+0.9
3,158,599	-		BWI76_RS15080	0.37	+1.2
3,158,600	-		BWI76_RS15080	0.37	+1.1
3,158,638	-		BWI76_RS15080	0.40	+0.3
3,158,676	-		BWI76_RS15080	0.42	+0.6
3,158,754	-		BWI76_RS15080	0.47	+0.9
3,158,762	+		BWI76_RS15080	0.48	-0.2
3,158,816	-		BWI76_RS15080	0.51	+1.1
3,158,901	+		BWI76_RS15080	0.57	+0.7
3,158,975	+				+1.5
3,158,995	+		BWI76_RS15080	0.63	-0.7
3,158,998	-		BWI76_RS15080	0.63	+1.4
3,159,080	-		BWI76_RS15080	0.69	-1.7
3,159,080	-		BWI76_RS15080	0.69	+0.8
3,159,080	-		BWI76_RS15080	0.69	+0.8
3,159,091	-		BWI76_RS15080	0.69	-1.9
3,159,177	-		BWI76_RS15080	0.75	+1.1
3,159,183	-		BWI76_RS15080	0.75	+0.9
3,159,188	-		BWI76_RS15080	0.76	+0.0
3,159,230	-		BWI76_RS15080	0.79	+0.4
3,159,250	-		BWI76_RS15080	0.80	+0.9
3,159,250	-		BWI76_RS15080	0.80	+0.5
3,159,272	-		BWI76_RS15080	0.81	+0.3
3,159,272	-		BWI76_RS15080	0.81	+0.5
3,159,272	-		BWI76_RS15080	0.81	+1.2
3,159,272	-		BWI76_RS15080	0.81	+0.9
3,159,272	-		BWI76_RS15080	0.81	-0.7
3,159,272	-		BWI76_RS15080	0.81	+0.6
3,159,272	-		BWI76_RS15080	0.81	+0.9
3,159,274	+		BWI76_RS15080	0.81	+1.9
3,159,289	+		BWI76_RS15080	0.82	+1.3
3,159,289	+		BWI76_RS15080	0.82	+1.7
3,159,289	+		BWI76_RS15080	0.82	-0.7
3,159,297	-		BWI76_RS15080	0.83	+1.0
3,159,297	-		BWI76_RS15080	0.83	+1.7
3,159,297	-		BWI76_RS15080	0.83	-1.7
3,159,297	-		BWI76_RS15080	0.83	+0.9
3,159,297	-		BWI76_RS15080	0.83	+0.9
3,159,297	-		BWI76_RS15080	0.83	+1.2
3,159,297	-		BWI76_RS15080	0.83	+4.0
3,159,297	-		BWI76_RS15080	0.83	+1.2
3,159,297	-		BWI76_RS15080	0.83	+0.8
3,159,297	-		BWI76_RS15080	0.83	+0.8
3,159,297	-		BWI76_RS15080	0.83	+1.3
3,159,297	-		BWI76_RS15080	0.83	+0.8
3,159,297	-		BWI76_RS15080	0.83	+1.0
3,159,297	-		BWI76_RS15080	0.83	+0.7
3,159,297	-		BWI76_RS15080	0.83	+1.7
3,159,297	-		BWI76_RS15080	0.83	+0.7
3,159,297	-		BWI76_RS15080	0.83	+0.3
3,159,297	-		BWI76_RS15080	0.83	+0.9
3,159,297	-		BWI76_RS15080	0.83	+1.0
3,159,297	-		BWI76_RS15080	0.83	+1.5
3,159,297	-		BWI76_RS15080	0.83	+0.7
3,159,297	-		BWI76_RS15080	0.83	+1.1
3,159,299	-		BWI76_RS15080	0.83	+1.4
3,159,299	-		BWI76_RS15080	0.83	+1.1
3,159,299	-		BWI76_RS15080	0.83	+1.1
3,159,299	-		BWI76_RS15080	0.83	+2.5
3,159,313	-		BWI76_RS15080	0.84	-0.0
3,159,344	-		BWI76_RS15080	0.86	+1.2
3,159,409	-				+1.7
3,159,410	-				+2.1
3,159,411	+				+0.4
3,159,419	-				-3.9
3,159,419	-				+0.6
3,159,419	-				+0.6
3,159,419	-				-0.5
3,159,419	-				-0.9
3,159,419	-				-1.5
3,159,419	-				+0.9
3,159,419	-				+0.7
3,159,419	-				+1.3
3,159,419	-				+0.4
3,159,421	-				+0.4
3,159,429	-				+0.9
3,159,429	-				+0.4
3,159,476	-				-0.8
3,159,476	-				+1.1
3,159,476	-				+0.8
3,159,529	-				+0.9
3,159,529	-				+0.9
3,159,543	-				-1.7
3,159,543	-				+1.6
3,159,570	-				-1.4
3,159,570	-				+1.4
3,159,590	+				+1.0
3,159,598	-				+1.4
3,159,598	-				-0.5
3,159,598	-				+0.6
3,159,648	-				-2.8
3,159,654	-				+0.4
3,159,686	+				-0.5
3,159,714	-				+0.9
3,159,717	+				+0.9
3,159,735	-				-1.0
3,159,913	+				+0.6
3,159,913	+				+1.1
3,159,914	+				+0.9
3,159,931	-				-0.9
3,159,939	+				+0.6
3,160,045	-				-1.1
3,160,053	-				-0.4
3,160,058	-				-2.5
3,160,058	-				-3.0
3,160,063	-				+1.3
3,160,070	+				-0.3
3,160,070	+				+1.2
3,160,075	+				+0.5
3,160,077	-				+1.0
3,160,078	-				+4.2
3,160,078	-				+0.9
3,160,078	-				+0.6
3,160,078	-				-1.7
3,160,078	-				+0.9
3,160,078	-				+0.6
3,160,078	-				+1.4
3,160,078	-				+2.0
3,160,083	-				+1.0
3,160,083	-				-1.5
3,160,083	-				+0.9
3,160,083	-				-0.4
3,160,085	+				+1.5
3,160,085	+				+0.4
3,160,093	-				-2.3
3,160,095	+				-2.1
3,160,103	-				+0.7
3,160,103	-				+0.5
3,160,107	+				-0.6
3,160,115	-				-0.7
3,160,160	-		BWI76_RS15085	0.12	-2.1
3,160,176	-		BWI76_RS15085	0.14	+0.6
3,160,222	+		BWI76_RS15085	0.18	+0.9
3,160,230	-		BWI76_RS15085	0.18	+0.4
3,160,258	+		BWI76_RS15085	0.21	+0.9
3,160,296	-				+3.5
3,160,358	+		BWI76_RS15085	0.29	+0.9
3,160,373	+		BWI76_RS15085	0.31	+2.0
3,160,386	-		BWI76_RS15085	0.32	+0.6
3,160,387	-		BWI76_RS15085	0.32	-0.6
3,160,391	-		BWI76_RS15085	0.32	-0.2
3,160,463	+		BWI76_RS15085	0.38	+1.7
3,160,477	-		BWI76_RS15085	0.40	+1.0
3,160,552	+		BWI76_RS15085	0.46	+1.3