Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14880

Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
3,117,485	-		BWI76_RS14875	0.83	+1.2
3,117,487	+		BWI76_RS14875	0.83	-0.5
3,117,583	+				+0.6
3,117,599	+				+0.6
3,117,636	+				+0.1
3,117,644	-				+0.2
3,117,644	-				-0.5
3,117,681	-				-3.2
3,117,847	+				+0.7
3,117,847	-				+2.4
3,117,859	-				+0.8
3,117,893	-				-0.8
3,117,933	-				+2.1
3,117,942	+				-0.1
3,117,950	+				+1.0
3,117,950	-				-3.4
3,117,952	+				+1.1
3,117,957	+				-0.4
3,117,957	+				+0.7
3,117,958	-				-1.6
3,117,965	-				+1.8
3,117,982	+				+0.0
3,117,983	+				+0.3
3,118,050	-				+0.8
3,118,085	+				-0.1
3,118,094	-				-2.5
3,118,105	+				+1.6
3,118,105	+				+0.4
3,118,105	+				+1.0
3,118,113	-				+0.2
3,118,127	-				-0.2
3,118,245	+				+1.2
3,118,245	+				+0.7
3,118,254	+				+0.7
3,118,321	-				-2.7
3,118,386	-				-1.2
3,118,390	-				+0.8
3,118,444	+		BWI76_RS14880	0.15	-0.2
3,118,477	-		BWI76_RS14880	0.20	-3.0
3,118,477	-		BWI76_RS14880	0.20	-2.9
3,118,477	-		BWI76_RS14880	0.20	-0.5
3,118,477	-		BWI76_RS14880	0.20	-2.4
3,118,479	+		BWI76_RS14880	0.20	-0.2
3,118,479	+		BWI76_RS14880	0.20	-0.2
3,118,536	+		BWI76_RS14880	0.27	-2.5
3,118,544	-		BWI76_RS14880	0.28	-0.8
3,118,544	-		BWI76_RS14880	0.28	+1.4
3,118,557	-		BWI76_RS14880	0.30	+1.8
3,118,635	+		BWI76_RS14880	0.40	-1.5
3,118,643	-		BWI76_RS14880	0.41	-0.2
3,118,651	-		BWI76_RS14880	0.42	-1.5
3,118,658	-		BWI76_RS14880	0.42	-1.1
3,118,685	+		BWI76_RS14880	0.46	-2.0
3,118,764	+		BWI76_RS14880	0.56	-0.4
3,118,882	-		BWI76_RS14880	0.71	-2.7
3,118,969	+		BWI76_RS14880	0.82	-1.1
3,118,969	+		BWI76_RS14880	0.82	-0.2
3,118,971	+		BWI76_RS14880	0.82	-0.7
3,118,971	+		BWI76_RS14880	0.82	-0.7
3,118,971	+		BWI76_RS14880	0.82	-1.2
3,118,975	-		BWI76_RS14880	0.83	-2.2
3,118,976	+		BWI76_RS14880	0.83	+1.6
3,118,977	-		BWI76_RS14880	0.83	-1.2
3,118,977	-		BWI76_RS14880	0.83	-2.8
3,118,977	-		BWI76_RS14880	0.83	-2.3
3,118,979	-		BWI76_RS14880	0.83	+1.1
3,118,984	-		BWI76_RS14880	0.84	-0.8
3,118,990	-				+0.8
3,119,008	+		BWI76_RS14880	0.87	-1.7
3,119,008	+		BWI76_RS14880	0.87	-1.1
3,119,046	+				-0.7
3,119,046	+				-2.5
3,119,046	+				-1.4
3,119,054	-				-1.8
3,119,054	-				+0.8
3,119,054	-				+3.6
3,119,077	-				-0.2
3,119,089	+				-1.2
3,119,096	-				+0.2
3,119,096	-				+0.8
3,119,103	-				-1.0
3,119,104	-				-1.5
3,119,105	+				-0.0
3,119,105	+				+0.8
3,119,105	+				-2.5
3,119,113	-				-0.2
3,119,185	+		BWI76_RS14885	0.10	-2.5
3,119,190	+		BWI76_RS14885	0.11	-0.4
3,119,198	-		BWI76_RS14885	0.13	-0.5
3,119,212	+		BWI76_RS14885	0.15	-1.2
3,119,309	-		BWI76_RS14885	0.33	+0.2
3,119,325	+		BWI76_RS14885	0.36	-0.9
3,119,357	+		BWI76_RS14885	0.41	-0.9
3,119,358	+		BWI76_RS14885	0.42	+0.5
3,119,366	+		BWI76_RS14885	0.43	-3.5
3,119,389	+		BWI76_RS14885	0.47	-0.7
3,119,389	+		BWI76_RS14885	0.47	+0.4
3,119,389	+		BWI76_RS14885	0.47	+1.6
3,119,389	+		BWI76_RS14885	0.47	+0.5
3,119,389	+		BWI76_RS14885	0.47	-0.3
3,119,389	+		BWI76_RS14885	0.47	-0.8
3,119,389	+		BWI76_RS14885	0.47	-1.0
3,119,389	+		BWI76_RS14885	0.47	-2.4
3,119,389	+		BWI76_RS14885	0.47	+0.4
3,119,389	+		BWI76_RS14885	0.47	-0.8
3,119,389	+		BWI76_RS14885	0.47	-1.5
3,119,389	+		BWI76_RS14885	0.47	+0.6
3,119,389	+		BWI76_RS14885	0.47	+0.0
3,119,389	+		BWI76_RS14885	0.47	-0.5
3,119,389	+		BWI76_RS14885	0.47	-0.8
3,119,389	+		BWI76_RS14885	0.47	+0.3
3,119,389	+		BWI76_RS14885	0.47	-0.1
3,119,389	+		BWI76_RS14885	0.47	+1.6
3,119,389	+		BWI76_RS14885	0.47	-1.2
3,119,389	+		BWI76_RS14885	0.47	-2.4
3,119,389	+		BWI76_RS14885	0.47	-3.5
3,119,389	+		BWI76_RS14885	0.47	+0.7
3,119,389	+		BWI76_RS14885	0.47	-0.8
3,119,389	+		BWI76_RS14885	0.47	+1.2
3,119,389	+		BWI76_RS14885	0.47	-2.5
3,119,389	+		BWI76_RS14885	0.47	+0.8
3,119,389	+		BWI76_RS14885	0.47	-0.4
3,119,389	+		BWI76_RS14885	0.47	+0.8
3,119,389	+		BWI76_RS14885	0.47	-0.5
3,119,389	+		BWI76_RS14885	0.47	+3.2
3,119,389	+		BWI76_RS14885	0.47	-0.6
3,119,389	+		BWI76_RS14885	0.47	+2.5
3,119,389	+		BWI76_RS14885	0.47	+2.1
3,119,389	+		BWI76_RS14885	0.47	+1.6
3,119,389	+		BWI76_RS14885	0.47	+0.5
3,119,389	+		BWI76_RS14885	0.47	+0.9
3,119,389	+		BWI76_RS14885	0.47	+0.8
3,119,389	+		BWI76_RS14885	0.47	-3.7
3,119,389	+				+2.4
3,119,389	+		BWI76_RS14885	0.47	-1.3
3,119,389	+		BWI76_RS14885	0.47	-3.4
3,119,389	+		BWI76_RS14885	0.47	-1.1
3,119,389	+		BWI76_RS14885	0.47	-4.3
3,119,389	+		BWI76_RS14885	0.47	+0.6
3,119,389	+		BWI76_RS14885	0.47	-0.3
3,119,389	+		BWI76_RS14885	0.47	-1.8
3,119,389	+		BWI76_RS14885	0.47	-1.4
3,119,389	+		BWI76_RS14885	0.47	-0.2
3,119,389	+		BWI76_RS14885	0.47	+0.7
3,119,389	+		BWI76_RS14885	0.47	+0.7
3,119,389	+		BWI76_RS14885	0.47	-0.2
3,119,389	+		BWI76_RS14885	0.47	+0.1
3,119,389	+		BWI76_RS14885	0.47	+1.5
3,119,389	+		BWI76_RS14885	0.47	-2.9
3,119,389	+		BWI76_RS14885	0.47	+0.4
3,119,397	-				-0.2
3,119,397	-				+0.8
3,119,397	-		BWI76_RS14885	0.49	-1.8
3,119,397	-		BWI76_RS14885	0.49	-2.5
3,119,397	-		BWI76_RS14885	0.49	+0.6
3,119,397	-		BWI76_RS14885	0.49	-2.0
3,119,397	-		BWI76_RS14885	0.49	+0.8
3,119,397	-		BWI76_RS14885	0.49	-0.8
3,119,397	-		BWI76_RS14885	0.49	-2.4
3,119,397	-		BWI76_RS14885	0.49	-2.4
3,119,397	-		BWI76_RS14885	0.49	-1.5
3,119,397	-		BWI76_RS14885	0.49	+0.8
3,119,397	-		BWI76_RS14885	0.49	-1.2
3,119,397	-				-0.2
3,119,397	-		BWI76_RS14885	0.49	+0.8
3,119,397	-		BWI76_RS14885	0.49	-0.4
3,119,397	-		BWI76_RS14885	0.49	+0.8
3,119,397	-		BWI76_RS14885	0.49	-0.8
3,119,429	+		BWI76_RS14885	0.55	-0.1
3,119,437	+		BWI76_RS14885	0.56	-1.2
3,119,437	+		BWI76_RS14885	0.56	-0.9
3,119,447	+		BWI76_RS14885	0.58	+1.1
3,119,447	+		BWI76_RS14885	0.58	-1.1
3,119,456	+		BWI76_RS14885	0.59	-0.0
3,119,456	+		BWI76_RS14885	0.59	+0.1
3,119,456	+		BWI76_RS14885	0.59	+0.0
3,119,460	+		BWI76_RS14885	0.60	+0.4
3,119,464	-				-0.8
3,119,484	+		BWI76_RS14885	0.64	-2.2
3,119,492	-		BWI76_RS14885	0.66	-0.2
3,119,503	+		BWI76_RS14885	0.68	+1.2
3,119,521	+		BWI76_RS14885	0.71	-2.4
3,119,537	+		BWI76_RS14885	0.74	-2.4
3,119,567	+		BWI76_RS14885	0.80	-2.7
3,119,602	-		BWI76_RS14885	0.86	+0.5
3,119,607	+		BWI76_RS14885	0.87	+0.8
3,119,650	+				+3.0
3,119,680	+				+0.5
3,119,680	+				-0.2
3,119,680	+				-0.6
3,119,680	+				+1.4
3,119,680	+				-0.8
3,119,680	+				+0.2
3,119,680	+				+1.0
3,119,680	+				-1.8
3,119,680	+				+0.7
3,119,680	+				+0.3
3,119,680	+				-1.3
3,119,680	+				+1.1
3,119,680	+				-0.8
3,119,680	+				+0.8
3,119,680	+				-0.3
3,119,680	+				+0.9
3,119,680	+				-0.2
3,119,680	+				+4.0
3,119,680	+				-2.2
3,119,680	+				-1.5
3,119,680	+				-2.9
3,119,688	-				-0.8
3,119,688	-				+0.4
3,119,690	-				-1.6
3,119,690	-				-1.2
3,119,723	-				-0.1
3,119,965	-		BWI76_RS14890	0.17	+0.6
3,119,982	+		BWI76_RS14890	0.18	-0.3
3,120,018	+		BWI76_RS14890	0.21	+0.6
3,120,024	-		BWI76_RS14890	0.21	-2.7