Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14835

Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14825 and BWI76_RS14830 overlap by 1 nucleotidesBWI76_RS14830 and BWI76_RS14835 are separated by 133 nucleotidesBWI76_RS14835 and BWI76_RS14840 are separated by 180 nucleotidesBWI76_RS14840 and BWI76_RS14845 are separated by 208 nucleotides BWI76_RS14825: BWI76_RS14825 - dienelactone hydrolase family protein, at 3,106,733 to 3,107,332 _RS14825 BWI76_RS14830: BWI76_RS14830 - hypothetical protein, at 3,107,332 to 3,107,904 _RS14830 BWI76_RS14835: BWI76_RS14835 - hypothetical protein, at 3,108,038 to 3,108,430 _RS14835 BWI76_RS14840: BWI76_RS14840 - hypothetical protein, at 3,108,611 to 3,109,213 _RS14840 BWI76_RS14845: BWI76_RS14845 - hypothetical protein, at 3,109,422 to 3,110,048 _RS14845 Position (kb) 3108 3109Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3107.604 kb on - strand, within BWI76_RS14830at 3107.727 kb on - strand, within BWI76_RS14830at 3107.735 kb on + strand, within BWI76_RS14830at 3107.821 kb on + strand, within BWI76_RS14830at 3108.022 kb on + strandat 3108.130 kb on - strand, within BWI76_RS14835at 3108.356 kb on + strand, within BWI76_RS14835at 3108.425 kb on + strandat 3108.594 kb on - strandat 3108.726 kb on - strand, within BWI76_RS14840at 3108.847 kb on - strand, within BWI76_RS14840at 3109.135 kb on + strand, within BWI76_RS14840at 3109.175 kb on - strandat 3109.240 kb on + strandat 3109.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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3,107,604 - BWI76_RS14830 0.47 -1.1
3,107,727 - BWI76_RS14830 0.69 +1.0
3,107,735 + BWI76_RS14830 0.70 -0.0
3,107,821 + BWI76_RS14830 0.85 +0.2
3,108,022 + -3.3
3,108,130 - BWI76_RS14835 0.23 +1.1
3,108,356 + BWI76_RS14835 0.81 +1.9
3,108,425 + +0.5
3,108,594 - +0.7
3,108,726 - BWI76_RS14840 0.19 +0.1
3,108,847 - BWI76_RS14840 0.39 +0.2
3,109,135 + BWI76_RS14840 0.87 -0.1
3,109,175 - +0.8
3,109,240 + -0.2
3,109,361 - +0.4

Or see this region's nucleotide sequence