Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12430 and BWI76_RS12435 are separated by 169 nucleotides BWI76_RS12435 and BWI76_RS12440 are separated by 25 nucleotides
BWI76_RS12430: BWI76_RS12430 - AraC family transcriptional regulator, at 2,596,466 to 2,598,772
_RS12430
BWI76_RS12435: BWI76_RS12435 - putative amino acid amidohydrolase, at 2,598,942 to 2,600,111
_RS12435
BWI76_RS12440: BWI76_RS12440 - MFS transporter, at 2,600,137 to 2,601,528
_RS12440
Position (kb)
2598
2599
2600
2601 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2598.015 kb on - strand, within BWI76_RS12430 at 2598.102 kb on + strand, within BWI76_RS12430 at 2598.151 kb on + strand, within BWI76_RS12430 at 2598.151 kb on + strand, within BWI76_RS12430 at 2598.344 kb on - strand, within BWI76_RS12430 at 2598.459 kb on - strand, within BWI76_RS12430 at 2598.543 kb on - strand at 2598.719 kb on + strand at 2598.920 kb on + strand at 2598.969 kb on - strand at 2599.137 kb on - strand, within BWI76_RS12435 at 2599.211 kb on + strand, within BWI76_RS12435 at 2599.219 kb on - strand, within BWI76_RS12435 at 2599.285 kb on - strand, within BWI76_RS12435 at 2599.366 kb on - strand, within BWI76_RS12435 at 2599.366 kb on - strand, within BWI76_RS12435 at 2599.366 kb on - strand, within BWI76_RS12435 at 2599.381 kb on - strand, within BWI76_RS12435 at 2599.657 kb on + strand, within BWI76_RS12435 at 2599.664 kb on + strand, within BWI76_RS12435 at 2599.809 kb on + strand, within BWI76_RS12435 at 2599.809 kb on + strand, within BWI76_RS12435 at 2599.817 kb on - strand, within BWI76_RS12435 at 2599.897 kb on + strand, within BWI76_RS12435 at 2600.149 kb on - strand at 2600.452 kb on - strand, within BWI76_RS12440 at 2600.454 kb on + strand, within BWI76_RS12440 at 2600.462 kb on - strand, within BWI76_RS12440 at 2600.564 kb on + strand, within BWI76_RS12440 at 2600.739 kb on - strand, within BWI76_RS12440 at 2600.821 kb on + strand, within BWI76_RS12440 at 2600.980 kb on - strand, within BWI76_RS12440 at 2601.066 kb on - strand, within BWI76_RS12440
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,598,015 - BWI76_RS12430 0.67 +0.9 2,598,102 + BWI76_RS12430 0.71 -1.3 2,598,151 + BWI76_RS12430 0.73 +1.0 2,598,151 + BWI76_RS12430 0.73 +0.0 2,598,344 - BWI76_RS12430 0.81 -0.1 2,598,459 - BWI76_RS12430 0.86 +0.0 2,598,543 - -1.1 2,598,719 + +0.9 2,598,920 + +0.5 2,598,969 - +2.6 2,599,137 - BWI76_RS12435 0.17 -2.3 2,599,211 + BWI76_RS12435 0.23 +3.9 2,599,219 - BWI76_RS12435 0.24 +3.3 2,599,285 - BWI76_RS12435 0.29 -0.2 2,599,366 - BWI76_RS12435 0.36 -0.8 2,599,366 - BWI76_RS12435 0.36 +0.3 2,599,366 - BWI76_RS12435 0.36 +2.2 2,599,381 - BWI76_RS12435 0.38 -1.4 2,599,657 + BWI76_RS12435 0.61 +0.4 2,599,664 + BWI76_RS12435 0.62 +0.3 2,599,809 + BWI76_RS12435 0.74 +0.2 2,599,809 + BWI76_RS12435 0.74 +0.7 2,599,817 - BWI76_RS12435 0.75 +0.3 2,599,897 + BWI76_RS12435 0.82 +0.9 2,600,149 - -0.2 2,600,452 - BWI76_RS12440 0.23 +0.8 2,600,454 + BWI76_RS12440 0.23 -0.6 2,600,462 - BWI76_RS12440 0.23 +1.8 2,600,564 + BWI76_RS12440 0.31 +0.1 2,600,739 - BWI76_RS12440 0.43 -3.4 2,600,821 + BWI76_RS12440 0.49 -1.1 2,600,980 - BWI76_RS12440 0.61 +1.5 2,601,066 - BWI76_RS12440 0.67 +0.3
Or see this region's nucleotide sequence