Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10890

Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10880 and BWI76_RS10885 are separated by 280 nucleotidesBWI76_RS10885 and BWI76_RS10890 are separated by 268 nucleotidesBWI76_RS10890 and BWI76_RS10895 are separated by 84 nucleotidesBWI76_RS10895 and BWI76_RS10900 are separated by 22 nucleotides BWI76_RS10880: BWI76_RS10880 - LysR family transcriptional regulator, at 2,299,798 to 2,300,703 _RS10880 BWI76_RS10885: BWI76_RS10885 - tRNA-Ser, at 2,300,984 to 2,301,071 _RS10885 BWI76_RS10890: BWI76_RS10890 - glyoxylate/hydroxypyruvate reductase A, at 2,301,340 to 2,302,278 _RS10890 BWI76_RS10895: BWI76_RS10895 - phosphatase, at 2,302,363 to 2,303,100 _RS10895 BWI76_RS10900: BWI76_RS10900 - putative oxidoreductase, at 2,303,123 to 2,303,677 _RS10900 Position (kb) 2301 2302 2303Strain fitness (log2 ratio) -2 -1 0 1 2at 2301.248 kb on - strandat 2301.335 kb on - strandat 2301.722 kb on + strand, within BWI76_RS10890at 2302.022 kb on + strand, within BWI76_RS10890at 2302.254 kb on + strandat 2302.370 kb on + strandat 2302.378 kb on - strandat 2302.393 kb on - strandat 2302.487 kb on - strand, within BWI76_RS10895at 2302.686 kb on + strand, within BWI76_RS10895at 2302.718 kb on + strand, within BWI76_RS10895at 2302.897 kb on + strand, within BWI76_RS10895at 2302.924 kb on + strand, within BWI76_RS10895at 2303.027 kb on - strandat 2303.148 kb on - strandat 2303.172 kb on - strandat 2303.210 kb on - strand, within BWI76_RS10900

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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2,301,248 - -0.8
2,301,335 - +0.6
2,301,722 + BWI76_RS10890 0.41 +0.6
2,302,022 + BWI76_RS10890 0.73 +1.1
2,302,254 + +0.2
2,302,370 + -1.5
2,302,378 - -1.2
2,302,393 - -0.8
2,302,487 - BWI76_RS10895 0.17 -0.2
2,302,686 + BWI76_RS10895 0.44 +0.0
2,302,718 + BWI76_RS10895 0.48 +1.8
2,302,897 + BWI76_RS10895 0.72 -1.1
2,302,924 + BWI76_RS10895 0.76 +0.7
2,303,027 - -0.2
2,303,148 - +0.8
2,303,172 - +0.2
2,303,210 - BWI76_RS10900 0.16 -2.0

Or see this region's nucleotide sequence