Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10380

Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10370 and BWI76_RS10375 are separated by 16 nucleotidesBWI76_RS10375 and BWI76_RS10380 are separated by 13 nucleotidesBWI76_RS10380 and BWI76_RS10385 are separated by 142 nucleotides BWI76_RS10370: BWI76_RS10370 - ABC transporter-like protein, at 2,196,061 to 2,196,840 _RS10370 BWI76_RS10375: BWI76_RS10375 - polar amino acid ABC transporter inner membrane subunit, at 2,196,857 to 2,197,522 _RS10375 BWI76_RS10380: BWI76_RS10380 - polar amino acid ABC transporter inner membrane subunit, at 2,197,536 to 2,198,207 _RS10380 BWI76_RS10385: BWI76_RS10385 - MmgE/PrpD family protein, at 2,198,350 to 2,199,759 _RS10385 Position (kb) 2197 2198 2199Strain fitness (log2 ratio) -1 0 1at 2196.630 kb on + strand, within BWI76_RS10370at 2196.630 kb on + strand, within BWI76_RS10370at 2196.630 kb on + strand, within BWI76_RS10370at 2196.638 kb on - strand, within BWI76_RS10370at 2196.638 kb on - strand, within BWI76_RS10370at 2196.638 kb on - strand, within BWI76_RS10370at 2196.844 kb on - strandat 2196.909 kb on + strandat 2196.924 kb on + strand, within BWI76_RS10375at 2197.144 kb on - strand, within BWI76_RS10375at 2197.233 kb on - strand, within BWI76_RS10375at 2197.334 kb on - strand, within BWI76_RS10375at 2197.551 kb on - strandat 2197.617 kb on - strand, within BWI76_RS10380at 2197.683 kb on - strand, within BWI76_RS10380at 2198.137 kb on + strand, within BWI76_RS10380at 2198.140 kb on + strandat 2198.209 kb on + strandat 2198.262 kb on + strandat 2198.433 kb on + strandat 2198.606 kb on - strand, within BWI76_RS10385at 2198.832 kb on - strand, within BWI76_RS10385

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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2,196,630 + BWI76_RS10370 0.73 +0.1
2,196,630 + BWI76_RS10370 0.73 +0.0
2,196,630 + BWI76_RS10370 0.73 -0.1
2,196,638 - BWI76_RS10370 0.74 -0.6
2,196,638 - BWI76_RS10370 0.74 +0.7
2,196,638 - BWI76_RS10370 0.74 +0.7
2,196,844 - +0.2
2,196,909 + +0.6
2,196,924 + BWI76_RS10375 0.10 +1.2
2,197,144 - BWI76_RS10375 0.43 -0.2
2,197,233 - BWI76_RS10375 0.56 -0.7
2,197,334 - BWI76_RS10375 0.72 +0.2
2,197,551 - -0.7
2,197,617 - BWI76_RS10380 0.12 +0.8
2,197,683 - BWI76_RS10380 0.22 +0.8
2,198,137 + BWI76_RS10380 0.89 +1.1
2,198,140 + +0.2
2,198,209 + -0.1
2,198,262 + +0.2
2,198,433 + +1.5
2,198,606 - BWI76_RS10385 0.18 +0.6
2,198,832 - BWI76_RS10385 0.34 +1.4

Or see this region's nucleotide sequence