Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07275 and BWI76_RS07280 are separated by 10 nucleotides BWI76_RS07280 and BWI76_RS07285 are separated by 171 nucleotides
BWI76_RS07275: BWI76_RS07275 - ABC transporter, at 1,530,419 to 1,531,525
_RS07275
BWI76_RS07280: BWI76_RS07280 - branched-chain amino acid ABC transporter permease, at 1,531,536 to 1,532,486
_RS07280
BWI76_RS07285: BWI76_RS07285 - LysR family transcriptional regulator, at 1,532,658 to 1,533,587
_RS07285
Position (kb)
1531
1532
1533 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1530.599 kb on + strand, within BWI76_RS07275 at 1530.693 kb on - strand, within BWI76_RS07275 at 1530.693 kb on - strand, within BWI76_RS07275 at 1530.751 kb on - strand, within BWI76_RS07275 at 1530.770 kb on + strand, within BWI76_RS07275 at 1530.826 kb on - strand, within BWI76_RS07275 at 1531.116 kb on - strand, within BWI76_RS07275 at 1531.150 kb on - strand at 1531.195 kb on + strand, within BWI76_RS07275 at 1531.342 kb on + strand, within BWI76_RS07275 at 1531.371 kb on + strand, within BWI76_RS07275 at 1531.371 kb on + strand, within BWI76_RS07275 at 1531.371 kb on + strand, within BWI76_RS07275 at 1531.379 kb on - strand, within BWI76_RS07275 at 1531.620 kb on + strand at 1531.658 kb on - strand, within BWI76_RS07280 at 1531.974 kb on - strand, within BWI76_RS07280 at 1532.024 kb on + strand, within BWI76_RS07280 at 1532.068 kb on - strand, within BWI76_RS07280 at 1532.272 kb on + strand, within BWI76_RS07280 at 1532.340 kb on + strand, within BWI76_RS07280 at 1532.395 kb on + strand at 1532.405 kb on - strand at 1532.405 kb on - strand at 1532.410 kb on + strand at 1532.416 kb on - strand at 1532.418 kb on - strand at 1532.446 kb on + strand at 1532.477 kb on - strand at 1532.501 kb on - strand at 1532.632 kb on + strand at 1532.640 kb on - strand at 1532.819 kb on - strand, within BWI76_RS07285 at 1532.945 kb on + strand, within BWI76_RS07285 at 1532.954 kb on - strand, within BWI76_RS07285 at 1533.209 kb on + strand, within BWI76_RS07285 at 1533.407 kb on - strand, within BWI76_RS07285 at 1533.439 kb on - strand, within BWI76_RS07285
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,530,599 + BWI76_RS07275 0.16 -1.6 1,530,693 - BWI76_RS07275 0.25 +0.6 1,530,693 - BWI76_RS07275 0.25 +0.4 1,530,751 - BWI76_RS07275 0.30 +0.7 1,530,770 + BWI76_RS07275 0.32 +0.1 1,530,826 - BWI76_RS07275 0.37 -0.2 1,531,116 - BWI76_RS07275 0.63 +0.6 1,531,150 - +0.8 1,531,195 + BWI76_RS07275 0.70 +1.2 1,531,342 + BWI76_RS07275 0.83 +0.8 1,531,371 + BWI76_RS07275 0.86 -0.8 1,531,371 + BWI76_RS07275 0.86 +0.9 1,531,371 + BWI76_RS07275 0.86 -0.7 1,531,379 - BWI76_RS07275 0.87 +0.3 1,531,620 + -0.6 1,531,658 - BWI76_RS07280 0.13 +0.3 1,531,974 - BWI76_RS07280 0.46 +0.8 1,532,024 + BWI76_RS07280 0.51 +0.9 1,532,068 - BWI76_RS07280 0.56 +0.9 1,532,272 + BWI76_RS07280 0.77 +0.9 1,532,340 + BWI76_RS07280 0.85 +0.3 1,532,395 + +0.7 1,532,405 - +1.5 1,532,405 - -1.2 1,532,410 + -0.6 1,532,416 - -0.4 1,532,418 - +0.5 1,532,446 + +0.9 1,532,477 - +0.3 1,532,501 - +0.3 1,532,632 + -0.0 1,532,640 - -0.0 1,532,819 - BWI76_RS07285 0.17 -1.6 1,532,945 + BWI76_RS07285 0.31 -1.4 1,532,954 - BWI76_RS07285 0.32 -0.5 1,533,209 + BWI76_RS07285 0.59 -0.8 1,533,407 - BWI76_RS07285 0.81 -2.8 1,533,439 - BWI76_RS07285 0.84 -1.5
Or see this region's nucleotide sequence