Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03801 and SMc03802 are separated by 144 nucleotides SMc03802 and SMc03803 are separated by 8 nucleotides SMc03803 and SMc03804 are separated by 424 nucleotides
SMc03801: SMc03801 - thioredoxin protein, at 3,466,366 to 3,467,358
SMc03801
SMc03802: SMc03802 - hypothetical protein, at 3,467,503 to 3,468,183
SMc03802
SMc03803: SMc03803 - hypothetical protein, at 3,468,192 to 3,468,380
SMc03803
SMc03804: SMc03804 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 3,468,805 to 3,470,031
SMc03804
Position (kb)
3467
3468
3469 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3466.515 kb on + strand, within SMc03801 at 3466.908 kb on - strand, within SMc03801 at 3466.964 kb on - strand, within SMc03801 at 3467.291 kb on + strand at 3467.356 kb on + strand at 3467.525 kb on - strand at 3467.610 kb on + strand, within SMc03802 at 3467.611 kb on - strand, within SMc03802 at 3467.611 kb on - strand, within SMc03802 at 3467.629 kb on + strand at 3467.748 kb on - strand, within SMc03802 at 3467.797 kb on + strand, within SMc03802 at 3467.797 kb on + strand, within SMc03802 at 3467.797 kb on + strand, within SMc03802 at 3468.022 kb on - strand, within SMc03802 at 3468.172 kb on - strand at 3468.489 kb on + strand at 3468.490 kb on - strand at 3468.490 kb on - strand at 3468.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 3,466,515 + SMc03801 0.15 -0.6 3,466,908 - SMc03801 0.55 -1.3 3,466,964 - SMc03801 0.60 -1.5 3,467,291 + +0.6 3,467,356 + -0.7 3,467,525 - -0.2 3,467,610 + SMc03802 0.16 -0.3 3,467,611 - SMc03802 0.16 -1.3 3,467,611 - SMc03802 0.16 -0.7 3,467,629 + +1.5 3,467,748 - SMc03802 0.36 -3.0 3,467,797 + SMc03802 0.43 -0.5 3,467,797 + SMc03802 0.43 +0.3 3,467,797 + SMc03802 0.43 -0.2 3,468,022 - SMc03802 0.76 -0.7 3,468,172 - +0.6 3,468,489 + -0.9 3,468,490 - +1.7 3,468,490 - -0.0 3,468,490 - +0.7
Or see this region's nucleotide sequence