Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20935 and SM_b20936 are separated by 221 nucleotides SM_b20936 and SM_b20937 are separated by 38 nucleotides SM_b20937 and SM_b20938 are separated by 46 nucleotides SM_b20938 and SM_b20939 overlap by 4 nucleotides
SM_b20935: SM_b20935 - transcriptional regulator, at 1,160,892 to 1,161,143
_b20935
SM_b20936: SM_b20936 - hypothetical protein, at 1,161,365 to 1,161,952
_b20936
SM_b20937: SM_b20937 - ABC transporter ATP-binding protein/permease, at 1,161,991 to 1,163,811
_b20937
SM_b20938: SM_b20938 - hypothetical protein, at 1,163,858 to 1,164,595
_b20938
SM_b20939: SM_b20939 - 6-pyruvoyl-tetrahydropterin synthase, at 1,164,592 to 1,164,951
_b20939
Position (kb)
1161
1162
1163
1164 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1161.044 kb on - strand, within SM_b20935 at 1161.044 kb on - strand, within SM_b20935 at 1161.137 kb on + strand at 1161.143 kb on + strand at 1161.143 kb on + strand at 1161.143 kb on + strand at 1161.143 kb on + strand at 1161.143 kb on + strand at 1161.144 kb on - strand at 1161.144 kb on - strand at 1161.144 kb on - strand at 1161.144 kb on - strand at 1161.144 kb on - strand at 1161.144 kb on - strand at 1161.144 kb on - strand at 1161.144 kb on - strand at 1161.144 kb on - strand at 1161.326 kb on - strand at 1161.571 kb on - strand, within SM_b20936 at 1161.590 kb on + strand, within SM_b20936 at 1161.621 kb on + strand, within SM_b20936 at 1161.621 kb on + strand, within SM_b20936 at 1161.622 kb on - strand, within SM_b20936 at 1161.622 kb on - strand, within SM_b20936 at 1161.704 kb on - strand, within SM_b20936 at 1161.709 kb on + strand, within SM_b20936 at 1161.710 kb on - strand, within SM_b20936 at 1161.710 kb on - strand, within SM_b20936 at 1161.721 kb on + strand, within SM_b20936 at 1161.722 kb on - strand, within SM_b20936 at 1161.733 kb on + strand, within SM_b20936 at 1161.733 kb on + strand, within SM_b20936 at 1161.734 kb on - strand, within SM_b20936 at 1161.739 kb on - strand, within SM_b20936 at 1161.766 kb on - strand, within SM_b20936 at 1161.766 kb on - strand, within SM_b20936 at 1161.766 kb on - strand, within SM_b20936 at 1161.776 kb on + strand, within SM_b20936 at 1161.951 kb on - strand at 1162.056 kb on + strand at 1162.056 kb on + strand at 1162.056 kb on + strand at 1162.057 kb on - strand at 1162.057 kb on - strand at 1162.117 kb on - strand at 1162.117 kb on - strand at 1162.121 kb on + strand at 1162.122 kb on - strand at 1162.149 kb on - strand at 1162.149 kb on - strand at 1162.251 kb on + strand, within SM_b20937 at 1162.251 kb on + strand, within SM_b20937 at 1162.251 kb on + strand, within SM_b20937 at 1162.252 kb on - strand, within SM_b20937 at 1162.252 kb on - strand, within SM_b20937 at 1162.252 kb on - strand, within SM_b20937 at 1162.252 kb on - strand, within SM_b20937 at 1162.597 kb on + strand, within SM_b20937 at 1162.597 kb on + strand, within SM_b20937 at 1162.598 kb on - strand, within SM_b20937 at 1162.740 kb on + strand, within SM_b20937 at 1162.740 kb on + strand, within SM_b20937 at 1162.740 kb on + strand, within SM_b20937 at 1162.741 kb on - strand, within SM_b20937 at 1162.832 kb on + strand, within SM_b20937 at 1162.833 kb on - strand, within SM_b20937 at 1162.874 kb on - strand, within SM_b20937 at 1162.899 kb on + strand, within SM_b20937 at 1162.900 kb on - strand, within SM_b20937 at 1162.953 kb on + strand, within SM_b20937 at 1162.953 kb on + strand, within SM_b20937 at 1162.953 kb on + strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1162.954 kb on - strand, within SM_b20937 at 1163.206 kb on - strand, within SM_b20937 at 1163.838 kb on + strand at 1164.019 kb on + strand, within SM_b20938 at 1164.020 kb on - strand, within SM_b20938 at 1164.040 kb on - strand, within SM_b20938 at 1164.040 kb on - strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.081 kb on + strand, within SM_b20938 at 1164.082 kb on - strand, within SM_b20938 at 1164.087 kb on + strand, within SM_b20938 at 1164.088 kb on - strand, within SM_b20938 at 1164.120 kb on - strand, within SM_b20938 at 1164.120 kb on - strand, within SM_b20938 at 1164.323 kb on + strand, within SM_b20938 at 1164.323 kb on + strand, within SM_b20938 at 1164.324 kb on - strand at 1164.324 kb on - strand, within SM_b20938 at 1164.432 kb on + strand, within SM_b20938 at 1164.603 kb on - strand at 1164.677 kb on + strand, within SM_b20939 at 1164.763 kb on - strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.764 kb on + strand, within SM_b20939 at 1164.765 kb on - strand at 1164.791 kb on + strand, within SM_b20939
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 1,161,044 - SM_b20935 0.60 -0.5 1,161,044 - SM_b20935 0.60 +0.1 1,161,137 + -0.2 1,161,143 + -0.6 1,161,143 + -1.1 1,161,143 + -0.4 1,161,143 + -0.1 1,161,143 + -0.6 1,161,144 - +0.3 1,161,144 - +0.5 1,161,144 - -2.9 1,161,144 - -0.0 1,161,144 - +0.9 1,161,144 - +0.4 1,161,144 - +0.5 1,161,144 - +0.2 1,161,144 - -1.4 1,161,326 - -0.0 1,161,571 - SM_b20936 0.35 -0.4 1,161,590 + SM_b20936 0.38 -0.6 1,161,621 + SM_b20936 0.44 +0.2 1,161,621 + SM_b20936 0.44 +0.4 1,161,622 - SM_b20936 0.44 +0.2 1,161,622 - SM_b20936 0.44 +0.5 1,161,704 - SM_b20936 0.58 +0.5 1,161,709 + SM_b20936 0.59 -1.1 1,161,710 - SM_b20936 0.59 +0.6 1,161,710 - SM_b20936 0.59 -2.2 1,161,721 + SM_b20936 0.61 -1.1 1,161,722 - SM_b20936 0.61 +1.3 1,161,733 + SM_b20936 0.63 +1.6 1,161,733 + SM_b20936 0.63 +0.8 1,161,734 - SM_b20936 0.63 -0.2 1,161,739 - SM_b20936 0.64 +1.3 1,161,766 - SM_b20936 0.68 -0.1 1,161,766 - SM_b20936 0.68 +0.8 1,161,766 - SM_b20936 0.68 +0.6 1,161,776 + SM_b20936 0.70 +1.1 1,161,951 - +0.1 1,162,056 + +0.5 1,162,056 + -0.3 1,162,056 + -0.9 1,162,057 - -0.0 1,162,057 - -0.1 1,162,117 - +1.4 1,162,117 - +0.0 1,162,121 + +0.2 1,162,122 - +0.1 1,162,149 - +1.0 1,162,149 - +0.2 1,162,251 + SM_b20937 0.14 -0.1 1,162,251 + SM_b20937 0.14 -1.2 1,162,251 + SM_b20937 0.14 +0.7 1,162,252 - SM_b20937 0.14 -0.1 1,162,252 - SM_b20937 0.14 +0.1 1,162,252 - SM_b20937 0.14 -0.7 1,162,252 - SM_b20937 0.14 +1.7 1,162,597 + SM_b20937 0.33 +0.3 1,162,597 + SM_b20937 0.33 -0.2 1,162,598 - SM_b20937 0.33 -0.5 1,162,740 + SM_b20937 0.41 +0.1 1,162,740 + SM_b20937 0.41 +0.4 1,162,740 + SM_b20937 0.41 +1.2 1,162,741 - SM_b20937 0.41 +0.9 1,162,832 + SM_b20937 0.46 +0.1 1,162,833 - SM_b20937 0.46 +0.2 1,162,874 - SM_b20937 0.48 -0.7 1,162,899 + SM_b20937 0.50 +0.8 1,162,900 - SM_b20937 0.50 -0.2 1,162,953 + SM_b20937 0.53 -0.5 1,162,953 + SM_b20937 0.53 +0.6 1,162,953 + SM_b20937 0.53 -0.3 1,162,954 - SM_b20937 0.53 +0.5 1,162,954 - SM_b20937 0.53 +0.4 1,162,954 - SM_b20937 0.53 -0.0 1,162,954 - SM_b20937 0.53 +0.2 1,162,954 - SM_b20937 0.53 +0.1 1,163,206 - SM_b20937 0.67 +0.3 1,163,838 + +0.3 1,164,019 + SM_b20938 0.22 -1.5 1,164,020 - SM_b20938 0.22 -0.9 1,164,040 - SM_b20938 0.25 +0.8 1,164,040 - SM_b20938 0.25 +0.5 1,164,081 + SM_b20938 0.30 +0.4 1,164,081 + SM_b20938 0.30 -0.9 1,164,081 + SM_b20938 0.30 +0.5 1,164,081 + SM_b20938 0.30 +1.6 1,164,082 - SM_b20938 0.30 -0.2 1,164,087 + SM_b20938 0.31 -4.3 1,164,088 - SM_b20938 0.31 -0.0 1,164,120 - SM_b20938 0.36 +0.0 1,164,120 - SM_b20938 0.36 +0.6 1,164,323 + SM_b20938 0.63 +2.1 1,164,323 + SM_b20938 0.63 +1.7 1,164,324 - +0.5 1,164,324 - SM_b20938 0.63 +0.3 1,164,432 + SM_b20938 0.78 -0.7 1,164,603 - +1.1 1,164,677 + SM_b20939 0.24 +0.3 1,164,763 - SM_b20939 0.47 -0.4 1,164,764 + SM_b20939 0.48 +0.6 1,164,764 + SM_b20939 0.48 +0.9 1,164,764 + SM_b20939 0.48 +1.4 1,164,765 - +1.5 1,164,791 + SM_b20939 0.55 -0.3
Or see this region's nucleotide sequence