Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20377

Experiment: D-Leucrose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20375 and SM_b20376 are separated by 203 nucleotidesSM_b20376 and SM_b20377 are separated by 43 nucleotidesSM_b20377 and SM_b20378 are separated by 33 nucleotides SM_b20375: SM_b20375 - transcriptional regulator, at 386,667 to 387,437 _b20375 SM_b20376: SM_b20376 - hypothetical protein, at 387,641 to 388,021 _b20376 SM_b20377: SM_b20377 - translation initiation inhibitor protein, at 388,065 to 388,448 _b20377 SM_b20378: SM_b20378 - aldehyde dehydrogenase, at 388,482 to 389,945 _b20378 Position (kb) 388 389Strain fitness (log2 ratio) -1 0 1 2 3at 387.753 kb on + strand, within SM_b20376at 387.755 kb on + strand, within SM_b20376at 387.756 kb on - strand, within SM_b20376at 387.756 kb on - strand, within SM_b20376at 387.795 kb on + strand, within SM_b20376at 387.795 kb on + strand, within SM_b20376at 387.796 kb on - strand, within SM_b20376at 387.866 kb on + strand, within SM_b20376at 387.867 kb on - strand, within SM_b20376at 387.867 kb on - strand, within SM_b20376at 387.929 kb on + strand, within SM_b20376at 387.930 kb on - strand, within SM_b20376at 388.180 kb on + strand, within SM_b20377at 388.180 kb on + strand, within SM_b20377at 388.180 kb on + strand, within SM_b20377at 388.180 kb on + strand, within SM_b20377at 388.180 kb on + strand, within SM_b20377at 388.181 kb on - strand, within SM_b20377at 388.564 kb on + strandat 388.565 kb on - strandat 388.693 kb on + strand, within SM_b20378at 388.693 kb on + strand, within SM_b20378at 388.694 kb on - strand, within SM_b20378at 388.694 kb on - strand, within SM_b20378at 388.965 kb on + strand, within SM_b20378at 388.966 kb on - strand, within SM_b20378at 388.966 kb on - strand, within SM_b20378at 388.966 kb on - strand, within SM_b20378at 388.966 kb on - strand, within SM_b20378at 389.056 kb on + strand, within SM_b20378at 389.057 kb on - strand, within SM_b20378at 389.094 kb on - strand, within SM_b20378at 389.094 kb on - strand, within SM_b20378

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Leucrose (C)
remove
387,753 + SM_b20376 0.29 +0.1
387,755 + SM_b20376 0.30 -0.0
387,756 - SM_b20376 0.30 -0.5
387,756 - SM_b20376 0.30 +0.2
387,795 + SM_b20376 0.40 -0.6
387,795 + SM_b20376 0.40 +0.0
387,796 - SM_b20376 0.41 -0.2
387,866 + SM_b20376 0.59 +0.5
387,867 - SM_b20376 0.59 -0.7
387,867 - SM_b20376 0.59 +3.4
387,929 + SM_b20376 0.76 +1.5
387,930 - SM_b20376 0.76 -0.7
388,180 + SM_b20377 0.30 +0.3
388,180 + SM_b20377 0.30 +0.0
388,180 + SM_b20377 0.30 -0.3
388,180 + SM_b20377 0.30 +0.7
388,180 + SM_b20377 0.30 +0.4
388,181 - SM_b20377 0.30 +1.7
388,564 + -0.4
388,565 - +0.1
388,693 + SM_b20378 0.14 -1.3
388,693 + SM_b20378 0.14 +0.3
388,694 - SM_b20378 0.14 +0.2
388,694 - SM_b20378 0.14 +0.8
388,965 + SM_b20378 0.33 -0.2
388,966 - SM_b20378 0.33 +0.8
388,966 - SM_b20378 0.33 -0.3
388,966 - SM_b20378 0.33 -0.1
388,966 - SM_b20378 0.33 +0.7
389,056 + SM_b20378 0.39 -0.4
389,057 - SM_b20378 0.39 +0.1
389,094 - SM_b20378 0.42 -0.8
389,094 - SM_b20378 0.42 -0.1

Or see this region's nucleotide sequence