Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20203 and SM_b20204 are separated by 282 nucleotides SM_b20204 and SM_b20205 are separated by 41 nucleotides SM_b20205 and SM_b20206 overlap by 4 nucleotides SM_b20206 and SM_b20207 overlap by 4 nucleotides
SM_b20203: SM_b20203 - transcriptional regulator, at 212,468 to 213,409
_b20203
SM_b20204: SM_b20204 - coenzyme PQQ synthesis protein PqqA, at 213,692 to 213,787
_b20204
SM_b20205: SM_b20205 - pyrroloquinoline quinone biosynthesis protein PqqB, at 213,829 to 214,740
_b20205
SM_b20206: SM_b20206 - pyrroloquinoline quinone biosynthesis protein PqqC, at 214,737 to 215,507
_b20206
SM_b20207: SM_b20207 - pyrroloquinoline quinone synthesis protein D, at 215,504 to 215,800
_b20207
Position (kb) 213
214
215 Strain fitness (log2 ratio) -1
0
1
2 at 213.205 kb on + strand, within SM_b20203 at 213.452 kb on + strand at 213.452 kb on + strand at 213.453 kb on - strand at 213.453 kb on - strand at 213.485 kb on + strand at 213.486 kb on - strand at 213.519 kb on - strand at 213.598 kb on - strand at 213.692 kb on - strand at 213.692 kb on - strand at 213.692 kb on - strand at 213.692 kb on - strand at 214.361 kb on + strand, within SM_b20205 at 214.361 kb on + strand, within SM_b20205 at 214.362 kb on - strand, within SM_b20205 at 214.414 kb on + strand, within SM_b20205 at 214.414 kb on + strand, within SM_b20205 at 214.415 kb on - strand, within SM_b20205 at 214.417 kb on + strand, within SM_b20205 at 214.417 kb on + strand, within SM_b20205 at 214.418 kb on - strand, within SM_b20205 at 214.418 kb on - strand, within SM_b20205 at 214.483 kb on + strand, within SM_b20205 at 214.630 kb on + strand, within SM_b20205 at 214.630 kb on + strand, within SM_b20205 at 214.630 kb on + strand, within SM_b20205 at 214.631 kb on - strand, within SM_b20205 at 214.631 kb on - strand, within SM_b20205 at 214.714 kb on + strand at 214.715 kb on - strand at 214.800 kb on + strand at 214.888 kb on - strand, within SM_b20206 at 214.888 kb on - strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.891 kb on - strand, within SM_b20206 at 215.062 kb on - strand, within SM_b20206 at 215.062 kb on - strand, within SM_b20206 at 215.083 kb on + strand, within SM_b20206 at 215.083 kb on + strand, within SM_b20206 at 215.115 kb on + strand, within SM_b20206 at 215.115 kb on + strand, within SM_b20206 at 215.116 kb on - strand, within SM_b20206 at 215.116 kb on - strand, within SM_b20206 at 215.227 kb on - strand, within SM_b20206 at 215.310 kb on + strand, within SM_b20206 at 215.310 kb on + strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.418 kb on + strand, within SM_b20206 at 215.418 kb on + strand, within SM_b20206 at 215.419 kb on - strand, within SM_b20206 at 215.419 kb on - strand, within SM_b20206
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 213,205 + SM_b20203 0.78 -1.6 213,452 + -0.2 213,452 + +2.7 213,453 - -0.1 213,453 - +0.0 213,485 + +0.2 213,486 - -0.1 213,519 - -0.4 213,598 - -0.7 213,692 - -0.0 213,692 - +1.3 213,692 - +0.5 213,692 - -0.6 214,361 + SM_b20205 0.58 +1.0 214,361 + SM_b20205 0.58 -1.5 214,362 - SM_b20205 0.58 +0.0 214,414 + SM_b20205 0.64 +0.0 214,414 + SM_b20205 0.64 +0.4 214,415 - SM_b20205 0.64 -0.3 214,417 + SM_b20205 0.64 +1.0 214,417 + SM_b20205 0.64 -0.1 214,418 - SM_b20205 0.65 +0.5 214,418 - SM_b20205 0.65 +0.7 214,483 + SM_b20205 0.72 +0.1 214,630 + SM_b20205 0.88 +0.7 214,630 + SM_b20205 0.88 +0.1 214,630 + SM_b20205 0.88 +0.2 214,631 - SM_b20205 0.88 +2.3 214,631 - SM_b20205 0.88 -0.9 214,714 + +0.1 214,715 - +1.1 214,800 + -0.4 214,888 - SM_b20206 0.20 -0.4 214,888 - SM_b20206 0.20 -0.6 214,890 + SM_b20206 0.20 +0.2 214,890 + SM_b20206 0.20 +0.1 214,890 + SM_b20206 0.20 -0.0 214,891 - SM_b20206 0.20 +1.1 215,062 - SM_b20206 0.42 -0.4 215,062 - SM_b20206 0.42 +1.0 215,083 + SM_b20206 0.45 -0.1 215,083 + SM_b20206 0.45 +0.3 215,115 + SM_b20206 0.49 -0.6 215,115 + SM_b20206 0.49 +0.3 215,116 - SM_b20206 0.49 +0.2 215,116 - SM_b20206 0.49 -0.1 215,227 - SM_b20206 0.64 +0.3 215,310 + SM_b20206 0.74 -1.0 215,310 + SM_b20206 0.74 +0.3 215,311 - SM_b20206 0.74 -0.1 215,311 - SM_b20206 0.74 +1.1 215,311 - SM_b20206 0.74 -0.1 215,418 + SM_b20206 0.88 -0.1 215,418 + SM_b20206 0.88 -0.2 215,419 - SM_b20206 0.88 +0.5 215,419 - SM_b20206 0.88 +0.7
Or see this region's nucleotide sequence