Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11880 and BWI76_RS11885 are separated by 165 nucleotides BWI76_RS11885 and BWI76_RS11890 are separated by 18 nucleotides
BWI76_RS11880: BWI76_RS11880 - 23S rRNA pseudouridylate synthase B, at 2,499,506 to 2,500,393
_RS11880
BWI76_RS11885: BWI76_RS11885 - MFS transporter, at 2,500,559 to 2,501,923
_RS11885
BWI76_RS11890: BWI76_RS11890 - glycosyl hydrolase, at 2,501,942 to 2,504,299
_RS11890
Position (kb)
2500
2501
2502 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2500.084 kb on + strand, within BWI76_RS11880 at 2500.130 kb on + strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.257 kb on + strand, within BWI76_RS11880 at 2500.257 kb on + strand, within BWI76_RS11880 at 2500.265 kb on - strand, within BWI76_RS11880 at 2500.319 kb on + strand at 2500.327 kb on - strand at 2500.381 kb on - strand at 2500.458 kb on - strand at 2500.458 kb on - strand at 2500.458 kb on - strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.516 kb on + strand at 2500.521 kb on + strand at 2500.524 kb on - strand at 2500.524 kb on - strand at 2500.524 kb on - strand at 2500.524 kb on - strand at 2500.524 kb on - strand at 2500.524 kb on - strand at 2500.524 kb on - strand at 2500.524 kb on - strand at 2500.524 kb on - strand at 2500.529 kb on - strand at 2500.540 kb on + strand at 2500.548 kb on - strand at 2500.595 kb on - strand at 2500.713 kb on + strand, within BWI76_RS11885 at 2500.723 kb on - strand, within BWI76_RS11885 at 2500.732 kb on - strand, within BWI76_RS11885 at 2500.804 kb on - strand, within BWI76_RS11885 at 2500.805 kb on - strand, within BWI76_RS11885 at 2500.816 kb on + strand, within BWI76_RS11885 at 2500.839 kb on + strand, within BWI76_RS11885 at 2500.839 kb on + strand, within BWI76_RS11885 at 2500.839 kb on + strand, within BWI76_RS11885 at 2500.839 kb on + strand, within BWI76_RS11885 at 2500.839 kb on + strand, within BWI76_RS11885 at 2500.865 kb on + strand, within BWI76_RS11885 at 2500.865 kb on - strand, within BWI76_RS11885 at 2500.867 kb on + strand, within BWI76_RS11885 at 2500.867 kb on + strand, within BWI76_RS11885 at 2500.872 kb on + strand, within BWI76_RS11885 at 2500.873 kb on - strand, within BWI76_RS11885 at 2500.880 kb on - strand at 2500.880 kb on - strand, within BWI76_RS11885 at 2500.915 kb on + strand, within BWI76_RS11885 at 2500.954 kb on + strand, within BWI76_RS11885 at 2500.970 kb on + strand, within BWI76_RS11885 at 2500.975 kb on + strand at 2500.981 kb on + strand, within BWI76_RS11885 at 2500.981 kb on + strand, within BWI76_RS11885 at 2500.983 kb on + strand, within BWI76_RS11885 at 2500.983 kb on + strand, within BWI76_RS11885 at 2500.983 kb on + strand, within BWI76_RS11885 at 2500.983 kb on + strand, within BWI76_RS11885 at 2500.991 kb on - strand, within BWI76_RS11885 at 2500.993 kb on + strand, within BWI76_RS11885 at 2500.993 kb on + strand, within BWI76_RS11885 at 2500.993 kb on + strand, within BWI76_RS11885 at 2500.993 kb on + strand, within BWI76_RS11885 at 2501.028 kb on + strand, within BWI76_RS11885 at 2501.052 kb on + strand, within BWI76_RS11885 at 2501.097 kb on + strand, within BWI76_RS11885 at 2501.100 kb on + strand, within BWI76_RS11885 at 2501.117 kb on + strand, within BWI76_RS11885 at 2501.118 kb on - strand, within BWI76_RS11885 at 2501.128 kb on + strand, within BWI76_RS11885 at 2501.133 kb on + strand, within BWI76_RS11885 at 2501.133 kb on + strand, within BWI76_RS11885 at 2501.133 kb on + strand, within BWI76_RS11885 at 2501.169 kb on + strand, within BWI76_RS11885 at 2501.269 kb on + strand, within BWI76_RS11885 at 2501.306 kb on + strand, within BWI76_RS11885 at 2501.306 kb on + strand, within BWI76_RS11885 at 2501.307 kb on + strand, within BWI76_RS11885 at 2501.313 kb on - strand, within BWI76_RS11885 at 2501.366 kb on + strand, within BWI76_RS11885 at 2501.366 kb on + strand, within BWI76_RS11885 at 2501.366 kb on + strand, within BWI76_RS11885 at 2501.366 kb on + strand, within BWI76_RS11885 at 2501.374 kb on - strand, within BWI76_RS11885 at 2501.374 kb on - strand, within BWI76_RS11885 at 2501.374 kb on - strand, within BWI76_RS11885 at 2501.395 kb on + strand, within BWI76_RS11885 at 2501.489 kb on + strand, within BWI76_RS11885 at 2501.489 kb on + strand, within BWI76_RS11885 at 2501.491 kb on + strand, within BWI76_RS11885 at 2501.535 kb on + strand, within BWI76_RS11885 at 2501.550 kb on + strand, within BWI76_RS11885 at 2501.550 kb on + strand, within BWI76_RS11885 at 2501.550 kb on + strand, within BWI76_RS11885 at 2501.554 kb on + strand, within BWI76_RS11885 at 2501.555 kb on + strand, within BWI76_RS11885 at 2501.555 kb on + strand, within BWI76_RS11885 at 2501.555 kb on + strand, within BWI76_RS11885 at 2501.555 kb on + strand, within BWI76_RS11885 at 2501.560 kb on + strand, within BWI76_RS11885 at 2501.560 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on + strand, within BWI76_RS11885 at 2501.565 kb on - strand, within BWI76_RS11885 at 2501.568 kb on - strand, within BWI76_RS11885 at 2501.568 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.573 kb on - strand, within BWI76_RS11885 at 2501.578 kb on - strand, within BWI76_RS11885 at 2501.593 kb on + strand, within BWI76_RS11885 at 2501.616 kb on + strand, within BWI76_RS11885 at 2501.624 kb on - strand, within BWI76_RS11885 at 2501.625 kb on + strand, within BWI76_RS11885 at 2501.635 kb on + strand, within BWI76_RS11885 at 2501.637 kb on + strand, within BWI76_RS11885 at 2501.637 kb on + strand, within BWI76_RS11885 at 2501.645 kb on - strand, within BWI76_RS11885 at 2501.671 kb on - strand, within BWI76_RS11885 at 2501.729 kb on + strand, within BWI76_RS11885 at 2501.729 kb on + strand, within BWI76_RS11885 at 2501.758 kb on + strand, within BWI76_RS11885 at 2501.758 kb on + strand, within BWI76_RS11885 at 2501.784 kb on + strand, within BWI76_RS11885 at 2501.792 kb on - strand at 2501.820 kb on + strand at 2501.822 kb on - strand at 2501.832 kb on + strand at 2501.839 kb on + strand at 2501.931 kb on + strand at 2501.931 kb on + strand at 2501.972 kb on - strand at 2502.084 kb on - strand at 2502.089 kb on + strand at 2502.091 kb on + strand at 2502.097 kb on - strand at 2502.175 kb on - strand at 2502.260 kb on + strand, within BWI76_RS11890 at 2502.263 kb on - strand, within BWI76_RS11890 at 2502.308 kb on + strand, within BWI76_RS11890
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 0.1 x remove 2,500,084 + BWI76_RS11880 0.65 +1.1 2,500,130 + BWI76_RS11880 0.70 +0.3 2,500,242 - BWI76_RS11880 0.83 -0.3 2,500,242 - BWI76_RS11880 0.83 +0.8 2,500,242 - BWI76_RS11880 0.83 +3.1 2,500,242 - BWI76_RS11880 0.83 -2.9 2,500,242 - BWI76_RS11880 0.83 -0.5 2,500,257 + BWI76_RS11880 0.85 +0.9 2,500,257 + BWI76_RS11880 0.85 -0.9 2,500,265 - BWI76_RS11880 0.85 +0.3 2,500,319 + +0.6 2,500,327 - -1.3 2,500,381 - +0.1 2,500,458 - +0.2 2,500,458 - -2.3 2,500,458 - +0.6 2,500,516 + +1.3 2,500,516 + -0.3 2,500,516 + +1.9 2,500,516 + -1.1 2,500,516 + -0.6 2,500,516 + +0.3 2,500,516 + +0.1 2,500,516 + -1.5 2,500,516 + -0.0 2,500,516 + +1.1 2,500,516 + +0.3 2,500,521 + -0.1 2,500,524 - +0.6 2,500,524 - -1.5 2,500,524 - +1.4 2,500,524 - -1.3 2,500,524 - +0.2 2,500,524 - -1.1 2,500,524 - -0.0 2,500,524 - -3.1 2,500,524 - -1.3 2,500,529 - +1.6 2,500,540 + +1.1 2,500,548 - +0.2 2,500,595 - +1.2 2,500,713 + BWI76_RS11885 0.11 -0.9 2,500,723 - BWI76_RS11885 0.12 +0.2 2,500,732 - BWI76_RS11885 0.13 -0.5 2,500,804 - BWI76_RS11885 0.18 +1.1 2,500,805 - BWI76_RS11885 0.18 -0.7 2,500,816 + BWI76_RS11885 0.19 -2.2 2,500,839 + BWI76_RS11885 0.21 -0.7 2,500,839 + BWI76_RS11885 0.21 -1.7 2,500,839 + BWI76_RS11885 0.21 +0.1 2,500,839 + BWI76_RS11885 0.21 -1.5 2,500,839 + BWI76_RS11885 0.21 +0.2 2,500,865 + BWI76_RS11885 0.22 -0.5 2,500,865 - BWI76_RS11885 0.22 -0.3 2,500,867 + BWI76_RS11885 0.23 -0.4 2,500,867 + BWI76_RS11885 0.23 -2.0 2,500,872 + BWI76_RS11885 0.23 -0.2 2,500,873 - BWI76_RS11885 0.23 -0.1 2,500,880 - +1.1 2,500,880 - BWI76_RS11885 0.24 -0.5 2,500,915 + BWI76_RS11885 0.26 +0.1 2,500,954 + BWI76_RS11885 0.29 +1.7 2,500,970 + BWI76_RS11885 0.30 -0.2 2,500,975 + +1.1 2,500,981 + BWI76_RS11885 0.31 -1.5 2,500,981 + BWI76_RS11885 0.31 +0.4 2,500,983 + BWI76_RS11885 0.31 +0.1 2,500,983 + BWI76_RS11885 0.31 -2.5 2,500,983 + BWI76_RS11885 0.31 -0.7 2,500,983 + BWI76_RS11885 0.31 +0.4 2,500,991 - BWI76_RS11885 0.32 +1.2 2,500,993 + BWI76_RS11885 0.32 +0.1 2,500,993 + BWI76_RS11885 0.32 -0.1 2,500,993 + BWI76_RS11885 0.32 -0.9 2,500,993 + BWI76_RS11885 0.32 -1.5 2,501,028 + BWI76_RS11885 0.34 -0.1 2,501,052 + BWI76_RS11885 0.36 -1.2 2,501,097 + BWI76_RS11885 0.39 +0.4 2,501,100 + BWI76_RS11885 0.40 -0.9 2,501,117 + BWI76_RS11885 0.41 -0.8 2,501,118 - BWI76_RS11885 0.41 -2.1 2,501,128 + BWI76_RS11885 0.42 -0.6 2,501,133 + BWI76_RS11885 0.42 -0.2 2,501,133 + BWI76_RS11885 0.42 -2.9 2,501,133 + BWI76_RS11885 0.42 -0.7 2,501,169 + BWI76_RS11885 0.45 -0.1 2,501,269 + BWI76_RS11885 0.52 -1.9 2,501,306 + BWI76_RS11885 0.55 -1.1 2,501,306 + BWI76_RS11885 0.55 +0.1 2,501,307 + BWI76_RS11885 0.55 -0.7 2,501,313 - BWI76_RS11885 0.55 +0.1 2,501,366 + BWI76_RS11885 0.59 +1.4 2,501,366 + BWI76_RS11885 0.59 -1.5 2,501,366 + BWI76_RS11885 0.59 +1.1 2,501,366 + BWI76_RS11885 0.59 +2.7 2,501,374 - BWI76_RS11885 0.60 +1.1 2,501,374 - BWI76_RS11885 0.60 -0.5 2,501,374 - BWI76_RS11885 0.60 +1.1 2,501,395 + BWI76_RS11885 0.61 -1.2 2,501,489 + BWI76_RS11885 0.68 +0.5 2,501,489 + BWI76_RS11885 0.68 +0.2 2,501,491 + BWI76_RS11885 0.68 -0.3 2,501,535 + BWI76_RS11885 0.72 -2.2 2,501,550 + BWI76_RS11885 0.73 -0.7 2,501,550 + BWI76_RS11885 0.73 -0.5 2,501,550 + BWI76_RS11885 0.73 -0.1 2,501,554 + BWI76_RS11885 0.73 +0.1 2,501,555 + BWI76_RS11885 0.73 -0.3 2,501,555 + BWI76_RS11885 0.73 -0.5 2,501,555 + BWI76_RS11885 0.73 -0.2 2,501,555 + BWI76_RS11885 0.73 -1.2 2,501,560 + BWI76_RS11885 0.73 -0.8 2,501,560 + BWI76_RS11885 0.73 +0.5 2,501,565 + BWI76_RS11885 0.74 -0.9 2,501,565 + BWI76_RS11885 0.74 -0.2 2,501,565 + BWI76_RS11885 0.74 -0.5 2,501,565 + BWI76_RS11885 0.74 +0.1 2,501,565 + BWI76_RS11885 0.74 +0.2 2,501,565 + BWI76_RS11885 0.74 +0.3 2,501,565 + BWI76_RS11885 0.74 +0.6 2,501,565 + BWI76_RS11885 0.74 -0.7 2,501,565 + BWI76_RS11885 0.74 +0.0 2,501,565 + BWI76_RS11885 0.74 +0.8 2,501,565 + BWI76_RS11885 0.74 -0.3 2,501,565 + BWI76_RS11885 0.74 -2.1 2,501,565 + BWI76_RS11885 0.74 +0.0 2,501,565 + BWI76_RS11885 0.74 +0.6 2,501,565 + BWI76_RS11885 0.74 +0.2 2,501,565 + BWI76_RS11885 0.74 -0.4 2,501,565 + BWI76_RS11885 0.74 +0.8 2,501,565 + BWI76_RS11885 0.74 -0.6 2,501,565 + BWI76_RS11885 0.74 -0.8 2,501,565 + BWI76_RS11885 0.74 -1.5 2,501,565 + BWI76_RS11885 0.74 -1.0 2,501,565 + BWI76_RS11885 0.74 +0.5 2,501,565 + BWI76_RS11885 0.74 -0.1 2,501,565 + BWI76_RS11885 0.74 +0.6 2,501,565 + BWI76_RS11885 0.74 +0.1 2,501,565 + BWI76_RS11885 0.74 +0.1 2,501,565 + BWI76_RS11885 0.74 -0.6 2,501,565 + BWI76_RS11885 0.74 +0.0 2,501,565 + BWI76_RS11885 0.74 +0.1 2,501,565 + BWI76_RS11885 0.74 -0.8 2,501,565 + BWI76_RS11885 0.74 -1.1 2,501,565 + BWI76_RS11885 0.74 -0.8 2,501,565 - BWI76_RS11885 0.74 -0.5 2,501,568 - BWI76_RS11885 0.74 +0.7 2,501,568 - BWI76_RS11885 0.74 -1.2 2,501,573 - BWI76_RS11885 0.74 +0.3 2,501,573 - BWI76_RS11885 0.74 +1.1 2,501,573 - BWI76_RS11885 0.74 -0.7 2,501,573 - BWI76_RS11885 0.74 +0.1 2,501,573 - BWI76_RS11885 0.74 -1.9 2,501,573 - BWI76_RS11885 0.74 -0.6 2,501,573 - BWI76_RS11885 0.74 -1.1 2,501,573 - BWI76_RS11885 0.74 +0.1 2,501,573 - BWI76_RS11885 0.74 -0.6 2,501,573 - BWI76_RS11885 0.74 +0.1 2,501,573 - BWI76_RS11885 0.74 +1.1 2,501,573 - BWI76_RS11885 0.74 -0.9 2,501,573 - BWI76_RS11885 0.74 +0.1 2,501,573 - BWI76_RS11885 0.74 -1.1 2,501,578 - BWI76_RS11885 0.75 -0.5 2,501,593 + BWI76_RS11885 0.76 +1.2 2,501,616 + BWI76_RS11885 0.77 +0.5 2,501,624 - BWI76_RS11885 0.78 -0.5 2,501,625 + BWI76_RS11885 0.78 -0.2 2,501,635 + BWI76_RS11885 0.79 -1.2 2,501,637 + BWI76_RS11885 0.79 +0.1 2,501,637 + BWI76_RS11885 0.79 +1.0 2,501,645 - BWI76_RS11885 0.80 -0.5 2,501,671 - BWI76_RS11885 0.81 +0.1 2,501,729 + BWI76_RS11885 0.86 -0.5 2,501,729 + BWI76_RS11885 0.86 -0.1 2,501,758 + BWI76_RS11885 0.88 +0.5 2,501,758 + BWI76_RS11885 0.88 +0.2 2,501,784 + BWI76_RS11885 0.90 +0.2 2,501,792 - -1.1 2,501,820 + +1.8 2,501,822 - -0.5 2,501,832 + -0.1 2,501,839 + -0.6 2,501,931 + -0.2 2,501,931 + -1.2 2,501,972 - +0.5 2,502,084 - -0.8 2,502,089 + -0.1 2,502,091 + -0.5 2,502,097 - -0.4 2,502,175 - +0.2 2,502,260 + BWI76_RS11890 0.13 -0.0 2,502,263 - BWI76_RS11890 0.14 +0.7 2,502,308 + BWI76_RS11890 0.16 -0.4
Or see this region's nucleotide sequence