Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08090 and BWI76_RS08095 are separated by 377 nucleotides BWI76_RS08095 and BWI76_RS08100 overlap by 1 nucleotides BWI76_RS08100 and BWI76_RS08105 overlap by 1 nucleotides
BWI76_RS08090: BWI76_RS08090 - ShlB-type POTRA domain/hemolysin secretion/activation protein ShlB/FhaC/HecB, at 1,714,319 to 1,715,989
_RS08090
BWI76_RS08095: BWI76_RS08095 - arginine ABC transporter ATP-binding protein, at 1,716,367 to 1,717,092
_RS08095
BWI76_RS08100: BWI76_RS08100 - glutamate/aspartate transporter permease GltK, at 1,717,092 to 1,717,766
_RS08100
BWI76_RS08105: BWI76_RS08105 - glutamate/aspartate ABC transporter permease GltJ, at 1,717,766 to 1,718,506
_RS08105
Position (kb)
1716
1717
1718 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1715.432 kb on + strand, within BWI76_RS08090 at 1715.443 kb on + strand, within BWI76_RS08090 at 1715.443 kb on + strand, within BWI76_RS08090 at 1715.451 kb on - strand at 1715.451 kb on - strand, within BWI76_RS08090 at 1715.465 kb on + strand, within BWI76_RS08090 at 1715.473 kb on - strand, within BWI76_RS08090 at 1715.473 kb on - strand, within BWI76_RS08090 at 1715.473 kb on - strand, within BWI76_RS08090 at 1715.490 kb on + strand, within BWI76_RS08090 at 1715.490 kb on + strand, within BWI76_RS08090 at 1715.498 kb on - strand, within BWI76_RS08090 at 1715.500 kb on + strand, within BWI76_RS08090 at 1715.508 kb on - strand, within BWI76_RS08090 at 1715.508 kb on - strand, within BWI76_RS08090 at 1715.508 kb on - strand, within BWI76_RS08090 at 1715.508 kb on - strand, within BWI76_RS08090 at 1715.544 kb on + strand, within BWI76_RS08090 at 1715.555 kb on + strand, within BWI76_RS08090 at 1715.555 kb on + strand, within BWI76_RS08090 at 1715.563 kb on - strand, within BWI76_RS08090 at 1715.591 kb on + strand, within BWI76_RS08090 at 1715.624 kb on + strand, within BWI76_RS08090 at 1715.624 kb on + strand, within BWI76_RS08090 at 1715.624 kb on + strand, within BWI76_RS08090 at 1715.877 kb on + strand at 1715.877 kb on + strand at 1715.877 kb on + strand at 1715.882 kb on + strand at 1715.885 kb on - strand at 1716.054 kb on + strand at 1716.058 kb on + strand at 1716.069 kb on - strand at 1716.179 kb on + strand at 1716.184 kb on + strand at 1716.184 kb on + strand at 1716.253 kb on + strand at 1716.260 kb on + strand at 1716.292 kb on - strand at 1716.339 kb on - strand at 1716.342 kb on - strand at 1716.372 kb on - strand at 1716.373 kb on - strand at 1716.373 kb on - strand at 1716.385 kb on - strand at 1716.396 kb on - strand at 1716.407 kb on + strand at 1716.407 kb on + strand at 1716.415 kb on - strand at 1716.460 kb on - strand, within BWI76_RS08095 at 1716.462 kb on + strand, within BWI76_RS08095 at 1716.530 kb on - strand, within BWI76_RS08095 at 1716.537 kb on - strand, within BWI76_RS08095 at 1716.590 kb on - strand, within BWI76_RS08095 at 1716.599 kb on + strand, within BWI76_RS08095 at 1716.626 kb on - strand, within BWI76_RS08095 at 1716.638 kb on - strand, within BWI76_RS08095 at 1716.677 kb on + strand, within BWI76_RS08095 at 1716.685 kb on - strand, within BWI76_RS08095 at 1716.779 kb on + strand, within BWI76_RS08095 at 1716.780 kb on - strand, within BWI76_RS08095 at 1716.787 kb on - strand, within BWI76_RS08095 at 1716.787 kb on - strand, within BWI76_RS08095 at 1716.787 kb on - strand, within BWI76_RS08095 at 1716.839 kb on - strand, within BWI76_RS08095 at 1716.927 kb on - strand, within BWI76_RS08095 at 1716.976 kb on + strand, within BWI76_RS08095 at 1717.097 kb on - strand at 1717.246 kb on + strand, within BWI76_RS08100 at 1717.357 kb on + strand, within BWI76_RS08100 at 1717.357 kb on + strand, within BWI76_RS08100 at 1717.365 kb on - strand, within BWI76_RS08100 at 1717.365 kb on - strand, within BWI76_RS08100 at 1717.386 kb on - strand, within BWI76_RS08100 at 1717.699 kb on + strand at 1717.856 kb on + strand, within BWI76_RS08105 at 1717.883 kb on + strand, within BWI76_RS08105 at 1717.906 kb on - strand, within BWI76_RS08105 at 1718.024 kb on - strand, within BWI76_RS08105 at 1718.034 kb on - strand, within BWI76_RS08105
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 0.1 x remove 1,715,432 + BWI76_RS08090 0.67 +0.4 1,715,443 + BWI76_RS08090 0.67 -0.5 1,715,443 + BWI76_RS08090 0.67 -0.4 1,715,451 - +1.0 1,715,451 - BWI76_RS08090 0.68 -0.3 1,715,465 + BWI76_RS08090 0.69 +0.7 1,715,473 - BWI76_RS08090 0.69 -1.4 1,715,473 - BWI76_RS08090 0.69 -2.3 1,715,473 - BWI76_RS08090 0.69 -0.0 1,715,490 + BWI76_RS08090 0.70 -1.6 1,715,490 + BWI76_RS08090 0.70 -0.6 1,715,498 - BWI76_RS08090 0.71 -0.0 1,715,500 + BWI76_RS08090 0.71 -1.4 1,715,508 - BWI76_RS08090 0.71 -1.0 1,715,508 - BWI76_RS08090 0.71 +2.0 1,715,508 - BWI76_RS08090 0.71 -0.0 1,715,508 - BWI76_RS08090 0.71 +1.0 1,715,544 + BWI76_RS08090 0.73 +1.6 1,715,555 + BWI76_RS08090 0.74 +0.4 1,715,555 + BWI76_RS08090 0.74 -1.0 1,715,563 - BWI76_RS08090 0.74 -0.6 1,715,591 + BWI76_RS08090 0.76 -0.3 1,715,624 + BWI76_RS08090 0.78 -0.0 1,715,624 + BWI76_RS08090 0.78 -3.9 1,715,624 + BWI76_RS08090 0.78 -1.0 1,715,877 + +0.0 1,715,877 + -0.3 1,715,877 + +0.7 1,715,882 + -2.4 1,715,885 - +1.2 1,716,054 + +0.1 1,716,058 + -0.5 1,716,069 - -1.4 1,716,179 + -0.0 1,716,184 + -0.0 1,716,184 + +0.4 1,716,253 + -0.4 1,716,260 + -0.0 1,716,292 - -1.4 1,716,339 - -0.0 1,716,342 - -0.0 1,716,372 - -0.1 1,716,373 - -0.0 1,716,373 - -1.2 1,716,385 - +0.5 1,716,396 - -0.2 1,716,407 + -0.0 1,716,407 + -1.1 1,716,415 - -0.5 1,716,460 - BWI76_RS08095 0.13 +0.3 1,716,462 + BWI76_RS08095 0.13 -0.6 1,716,530 - BWI76_RS08095 0.22 +0.3 1,716,537 - BWI76_RS08095 0.23 -1.0 1,716,590 - BWI76_RS08095 0.31 +1.0 1,716,599 + BWI76_RS08095 0.32 +1.0 1,716,626 - BWI76_RS08095 0.36 -0.7 1,716,638 - BWI76_RS08095 0.37 -1.0 1,716,677 + BWI76_RS08095 0.43 -1.0 1,716,685 - BWI76_RS08095 0.44 -0.1 1,716,779 + BWI76_RS08095 0.57 +1.0 1,716,780 - BWI76_RS08095 0.57 -2.3 1,716,787 - BWI76_RS08095 0.58 -0.7 1,716,787 - BWI76_RS08095 0.58 -0.0 1,716,787 - BWI76_RS08095 0.58 +0.6 1,716,839 - BWI76_RS08095 0.65 -1.6 1,716,927 - BWI76_RS08095 0.77 -0.3 1,716,976 + BWI76_RS08095 0.84 -1.0 1,717,097 - -0.4 1,717,246 + BWI76_RS08100 0.23 -0.7 1,717,357 + BWI76_RS08100 0.39 -0.8 1,717,357 + BWI76_RS08100 0.39 -1.3 1,717,365 - BWI76_RS08100 0.40 +0.1 1,717,365 - BWI76_RS08100 0.40 -0.8 1,717,386 - BWI76_RS08100 0.44 -0.6 1,717,699 + -1.4 1,717,856 + BWI76_RS08105 0.12 -1.6 1,717,883 + BWI76_RS08105 0.16 -0.7 1,717,906 - BWI76_RS08105 0.19 -0.2 1,718,024 - BWI76_RS08105 0.35 -0.9 1,718,034 - BWI76_RS08105 0.36 +0.9
Or see this region's nucleotide sequence