Strain Fitness in Sinorhizobium meliloti 1021 around SMa1325

Experiment: palatinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1322 and SMa1323 are separated by 96 nucleotidesSMa1323 and SMa1325 are separated by 260 nucleotidesSMa1325 and SMa1326 are separated by 73 nucleotidesSMa1326 and SMa1327 are separated by 49 nucleotides SMa1322: SMa1322 - hypothetical protein, at 720,821 to 721,339 SMa1322 SMa1323: SMa1323 - Transcription regulator, at 721,436 to 721,804 SMa1323 SMa1325: SMa1325 - hypothetical protein, at 722,065 to 722,316 SMa1325 SMa1326: SMa1326 - hypothetical protein, at 722,390 to 723,037 SMa1326 SMa1327: SMa1327 - hydrolase, at 723,087 to 723,935 SMa1327 Position (kb) 722 723Strain fitness (log2 ratio) -1 0 1 2at 721.080 kb on + strand, within SMa1322at 721.081 kb on - strand, within SMa1322at 721.081 kb on - strand, within SMa1322at 721.083 kb on + strand, within SMa1322at 721.093 kb on - strand, within SMa1322at 721.234 kb on + strand, within SMa1322at 721.268 kb on - strand, within SMa1322at 721.284 kb on + strand, within SMa1322at 721.285 kb on - strand, within SMa1322at 721.295 kb on + strandat 721.296 kb on - strandat 721.474 kb on - strand, within SMa1323at 721.572 kb on - strand, within SMa1323at 721.687 kb on + strand, within SMa1323at 721.687 kb on + strand, within SMa1323at 721.768 kb on - strandat 721.823 kb on - strandat 721.918 kb on + strandat 721.918 kb on + strandat 721.918 kb on + strandat 721.919 kb on - strandat 721.922 kb on - strandat 722.206 kb on + strand, within SMa1325at 722.253 kb on - strand, within SMa1325at 722.299 kb on + strandat 722.300 kb on - strandat 722.300 kb on - strandat 722.300 kb on - strandat 722.300 kb on - strandat 722.300 kb on - strandat 722.324 kb on + strandat 722.325 kb on - strandat 722.335 kb on + strandat 722.336 kb on - strandat 722.336 kb on - strandat 722.363 kb on + strandat 722.364 kb on - strandat 722.378 kb on + strandat 722.439 kb on + strandat 722.439 kb on + strandat 722.527 kb on + strand, within SMa1326at 722.527 kb on + strand, within SMa1326at 722.540 kb on + strand, within SMa1326at 722.541 kb on - strand, within SMa1326at 722.830 kb on + strand, within SMa1326at 722.831 kb on - strand, within SMa1326at 723.022 kb on + strandat 723.040 kb on + strandat 723.040 kb on + strandat 723.040 kb on + strandat 723.040 kb on + strandat 723.040 kb on + strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.041 kb on - strandat 723.131 kb on + strandat 723.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction palatinose (C)
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721,080 + SMa1322 0.50 +0.0
721,081 - SMa1322 0.50 -0.8
721,081 - SMa1322 0.50 -1.2
721,083 + SMa1322 0.50 -0.2
721,093 - SMa1322 0.52 +0.1
721,234 + SMa1322 0.80 +1.8
721,268 - SMa1322 0.86 -0.4
721,284 + SMa1322 0.89 +0.0
721,285 - SMa1322 0.89 -0.3
721,295 + -0.6
721,296 - +1.3
721,474 - SMa1323 0.10 -0.3
721,572 - SMa1323 0.37 -0.3
721,687 + SMa1323 0.68 +1.0
721,687 + SMa1323 0.68 -1.1
721,768 - +0.5
721,823 - +0.4
721,918 + +0.6
721,918 + -0.5
721,918 + -0.9
721,919 - +0.1
721,922 - +0.3
722,206 + SMa1325 0.56 -0.8
722,253 - SMa1325 0.75 -0.2
722,299 + -0.3
722,300 - -0.9
722,300 - +1.4
722,300 - +0.2
722,300 - -1.6
722,300 - -0.5
722,324 + -0.5
722,325 - +0.1
722,335 + +1.3
722,336 - +0.1
722,336 - -0.4
722,363 + -0.3
722,364 - -0.1
722,378 + -0.9
722,439 + +0.4
722,439 + -0.1
722,527 + SMa1326 0.21 +0.0
722,527 + SMa1326 0.21 -0.4
722,540 + SMa1326 0.23 -0.6
722,541 - SMa1326 0.23 +0.2
722,830 + SMa1326 0.68 +0.0
722,831 - SMa1326 0.68 -0.4
723,022 + +0.4
723,040 + +0.1
723,040 + +0.0
723,040 + -0.1
723,040 + -0.9
723,040 + -0.6
723,041 - +0.0
723,041 - +0.6
723,041 - +0.2
723,041 - -0.6
723,041 - -0.4
723,041 - +0.2
723,131 + -0.7
723,132 - +0.8

Or see this region's nucleotide sequence