Experiment: palatinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20328 and SM_b20329 are separated by 165 nucleotides SM_b20329 and SM_b20330 overlap by 4 nucleotides
SM_b20328: SM_b20328 - ABC transporter for D-trehalose/D-maltose/sucrose, ATPase component (ThuK) <small>(from data)</small>, at 331,283 to 332,311
_b20328
SM_b20329: SM_b20329 - required for glucoside 3-dehydrogenase activity on raffinose or trehalose (thuA) (EC 1.1.99.13) <small>(from data)</small>, at 332,477 to 333,289
_b20329
SM_b20330: SM_b20330 - glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) <small>(from data)</small>, at 333,286 to 334,383
_b20330
Position (kb) 332
333
334 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 331.549 kb on + strand, within SM_b20328 at 331.559 kb on + strand, within SM_b20328 at 331.662 kb on + strand, within SM_b20328 at 331.850 kb on + strand, within SM_b20328 at 331.850 kb on + strand, within SM_b20328 at 331.851 kb on - strand, within SM_b20328 at 331.897 kb on - strand, within SM_b20328 at 332.033 kb on + strand, within SM_b20328 at 332.033 kb on + strand, within SM_b20328 at 332.033 kb on + strand, within SM_b20328 at 332.033 kb on + strand, within SM_b20328 at 332.033 kb on + strand, within SM_b20328 at 332.033 kb on + strand, within SM_b20328 at 332.034 kb on - strand, within SM_b20328 at 332.034 kb on - strand, within SM_b20328 at 332.034 kb on - strand, within SM_b20328 at 332.141 kb on + strand, within SM_b20328 at 332.141 kb on + strand, within SM_b20328 at 332.142 kb on - strand, within SM_b20328 at 332.142 kb on - strand, within SM_b20328 at 332.142 kb on - strand, within SM_b20328 at 332.142 kb on - strand, within SM_b20328 at 332.143 kb on + strand, within SM_b20328 at 332.144 kb on - strand, within SM_b20328 at 332.144 kb on - strand, within SM_b20328 at 332.144 kb on - strand, within SM_b20328 at 332.144 kb on - strand, within SM_b20328 at 332.144 kb on - strand, within SM_b20328 at 332.147 kb on + strand, within SM_b20328 at 332.148 kb on - strand, within SM_b20328 at 332.395 kb on + strand at 332.396 kb on - strand at 332.751 kb on + strand, within SM_b20329 at 332.751 kb on + strand, within SM_b20329 at 332.752 kb on - strand, within SM_b20329 at 332.790 kb on + strand, within SM_b20329 at 332.790 kb on + strand, within SM_b20329 at 332.963 kb on + strand, within SM_b20329 at 332.963 kb on + strand, within SM_b20329 at 332.963 kb on + strand, within SM_b20329 at 332.963 kb on + strand, within SM_b20329 at 332.964 kb on - strand, within SM_b20329 at 332.964 kb on - strand, within SM_b20329 at 332.964 kb on - strand, within SM_b20329 at 333.073 kb on + strand, within SM_b20329 at 333.073 kb on + strand, within SM_b20329 at 333.081 kb on - strand, within SM_b20329 at 333.130 kb on - strand, within SM_b20329 at 333.130 kb on - strand, within SM_b20329 at 333.164 kb on + strand, within SM_b20329 at 333.165 kb on - strand, within SM_b20329 at 333.166 kb on + strand, within SM_b20329 at 333.166 kb on + strand at 333.182 kb on + strand, within SM_b20329 at 333.182 kb on + strand, within SM_b20329 at 333.183 kb on - strand, within SM_b20329 at 333.185 kb on - strand, within SM_b20329 at 333.185 kb on - strand, within SM_b20329 at 333.185 kb on - strand, within SM_b20329 at 333.748 kb on + strand, within SM_b20330 at 333.748 kb on + strand, within SM_b20330 at 333.749 kb on - strand, within SM_b20330 at 333.749 kb on - strand, within SM_b20330 at 333.967 kb on + strand at 333.968 kb on - strand, within SM_b20330 at 334.119 kb on + strand, within SM_b20330 at 334.119 kb on + strand, within SM_b20330 at 334.213 kb on + strand, within SM_b20330 at 334.214 kb on - strand, within SM_b20330 at 334.214 kb on - strand, within SM_b20330
Per-strain Table
Position Strand Gene LocusTag Fraction palatinose (C) remove 331,549 + SM_b20328 0.26 -0.4 331,559 + SM_b20328 0.27 -5.2 331,662 + SM_b20328 0.37 -4.0 331,850 + SM_b20328 0.55 -2.4 331,850 + SM_b20328 0.55 -0.6 331,851 - SM_b20328 0.55 -3.2 331,897 - SM_b20328 0.60 -0.9 332,033 + SM_b20328 0.73 -1.2 332,033 + SM_b20328 0.73 -3.2 332,033 + SM_b20328 0.73 -2.4 332,033 + SM_b20328 0.73 -2.6 332,033 + SM_b20328 0.73 +0.9 332,033 + SM_b20328 0.73 -2.5 332,034 - SM_b20328 0.73 -3.6 332,034 - SM_b20328 0.73 -2.6 332,034 - SM_b20328 0.73 -5.2 332,141 + SM_b20328 0.83 -2.9 332,141 + SM_b20328 0.83 -2.8 332,142 - SM_b20328 0.83 -2.0 332,142 - SM_b20328 0.83 -3.1 332,142 - SM_b20328 0.83 -2.5 332,142 - SM_b20328 0.83 -2.5 332,143 + SM_b20328 0.84 -1.5 332,144 - SM_b20328 0.84 -2.2 332,144 - SM_b20328 0.84 -5.1 332,144 - SM_b20328 0.84 -3.5 332,144 - SM_b20328 0.84 -4.5 332,144 - SM_b20328 0.84 -2.0 332,147 + SM_b20328 0.84 +1.3 332,148 - SM_b20328 0.84 -2.7 332,395 + -1.1 332,396 - -2.2 332,751 + SM_b20329 0.34 -0.9 332,751 + SM_b20329 0.34 -3.3 332,752 - SM_b20329 0.34 -3.7 332,790 + SM_b20329 0.38 -3.6 332,790 + SM_b20329 0.38 -5.5 332,963 + SM_b20329 0.60 -0.9 332,963 + SM_b20329 0.60 +0.9 332,963 + SM_b20329 0.60 -4.4 332,963 + SM_b20329 0.60 -0.4 332,964 - SM_b20329 0.60 -4.1 332,964 - SM_b20329 0.60 -3.3 332,964 - SM_b20329 0.60 -1.6 333,073 + SM_b20329 0.73 -3.2 333,073 + SM_b20329 0.73 -4.5 333,081 - SM_b20329 0.74 -1.7 333,130 - SM_b20329 0.80 -0.9 333,130 - SM_b20329 0.80 -3.1 333,164 + SM_b20329 0.85 -5.1 333,165 - SM_b20329 0.85 -3.6 333,166 + SM_b20329 0.85 -1.5 333,166 + -0.9 333,182 + SM_b20329 0.87 -5.6 333,182 + SM_b20329 0.87 -5.5 333,183 - SM_b20329 0.87 -1.5 333,185 - SM_b20329 0.87 -3.3 333,185 - SM_b20329 0.87 -0.4 333,185 - SM_b20329 0.87 -1.7 333,748 + SM_b20330 0.42 -3.3 333,748 + SM_b20330 0.42 -4.4 333,749 - SM_b20330 0.42 +0.7 333,749 - SM_b20330 0.42 -4.6 333,967 + -0.9 333,968 - SM_b20330 0.62 -2.5 334,119 + SM_b20330 0.76 -1.6 334,119 + SM_b20330 0.76 -3.0 334,213 + SM_b20330 0.84 -3.1 334,214 - SM_b20330 0.85 -2.5 334,214 - SM_b20330 0.85 -2.6
Or see this region's nucleotide sequence