Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25995 and BWI76_RS26000 overlap by 11 nucleotides BWI76_RS26000 and BWI76_RS26005 are separated by 89 nucleotides BWI76_RS26005 and BWI76_RS26010 are separated by 31 nucleotides
BWI76_RS25995: BWI76_RS25995 - membrane protein, at 5,371,779 to 5,373,857
_RS25995
BWI76_RS26000: BWI76_RS26000 - aspartate aminotransferase family protein, at 5,373,847 to 5,375,067
_RS26000
BWI76_RS26005: BWI76_RS26005 - glutamine amidotransferase, at 5,375,157 to 5,375,720
_RS26005
BWI76_RS26010: BWI76_RS26010 - cell filamentation protein Fic, at 5,375,752 to 5,376,354
_RS26010
Position (kb) 5373
5374
5375
5376 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5372.885 kb on + strand, within BWI76_RS25995 at 5372.890 kb on + strand, within BWI76_RS25995 at 5372.890 kb on + strand, within BWI76_RS25995 at 5372.921 kb on - strand, within BWI76_RS25995 at 5372.936 kb on + strand, within BWI76_RS25995 at 5372.944 kb on - strand, within BWI76_RS25995 at 5373.073 kb on - strand, within BWI76_RS25995 at 5373.086 kb on - strand, within BWI76_RS25995 at 5373.093 kb on - strand, within BWI76_RS25995 at 5373.105 kb on - strand, within BWI76_RS25995 at 5373.110 kb on - strand, within BWI76_RS25995 at 5373.159 kb on - strand, within BWI76_RS25995 at 5373.174 kb on - strand, within BWI76_RS25995 at 5373.183 kb on + strand, within BWI76_RS25995 at 5373.372 kb on - strand, within BWI76_RS25995 at 5373.545 kb on + strand, within BWI76_RS25995 at 5373.553 kb on - strand, within BWI76_RS25995 at 5373.569 kb on - strand, within BWI76_RS25995 at 5373.618 kb on - strand, within BWI76_RS25995 at 5373.930 kb on + strand at 5373.948 kb on - strand at 5374.067 kb on + strand, within BWI76_RS26000 at 5374.262 kb on + strand, within BWI76_RS26000 at 5374.302 kb on + strand, within BWI76_RS26000 at 5374.312 kb on + strand, within BWI76_RS26000 at 5374.312 kb on + strand, within BWI76_RS26000 at 5374.315 kb on - strand, within BWI76_RS26000 at 5374.396 kb on + strand, within BWI76_RS26000 at 5374.418 kb on - strand, within BWI76_RS26000 at 5374.475 kb on - strand, within BWI76_RS26000 at 5374.649 kb on + strand, within BWI76_RS26000 at 5374.823 kb on - strand, within BWI76_RS26000 at 5374.970 kb on + strand at 5374.978 kb on - strand at 5375.294 kb on + strand, within BWI76_RS26005 at 5375.367 kb on - strand, within BWI76_RS26005 at 5375.781 kb on - strand at 5375.781 kb on - strand at 5375.850 kb on - strand, within BWI76_RS26010 at 5375.870 kb on - strand, within BWI76_RS26010 at 5375.982 kb on - strand, within BWI76_RS26010 at 5376.018 kb on + strand, within BWI76_RS26010
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x remove 5,372,885 + BWI76_RS25995 0.53 +0.1 5,372,890 + BWI76_RS25995 0.53 +0.2 5,372,890 + BWI76_RS25995 0.53 -1.7 5,372,921 - BWI76_RS25995 0.55 +0.4 5,372,936 + BWI76_RS25995 0.56 -0.2 5,372,944 - BWI76_RS25995 0.56 -1.0 5,373,073 - BWI76_RS25995 0.62 +0.0 5,373,086 - BWI76_RS25995 0.63 -0.1 5,373,093 - BWI76_RS25995 0.63 +0.5 5,373,105 - BWI76_RS25995 0.64 -0.0 5,373,110 - BWI76_RS25995 0.64 +1.7 5,373,159 - BWI76_RS25995 0.66 +0.0 5,373,174 - BWI76_RS25995 0.67 -1.0 5,373,183 + BWI76_RS25995 0.68 +0.9 5,373,372 - BWI76_RS25995 0.77 -0.2 5,373,545 + BWI76_RS25995 0.85 -0.3 5,373,553 - BWI76_RS25995 0.85 -1.7 5,373,569 - BWI76_RS25995 0.86 +0.7 5,373,618 - BWI76_RS25995 0.88 +1.6 5,373,930 + +1.1 5,373,948 - -3.2 5,374,067 + BWI76_RS26000 0.18 -1.2 5,374,262 + BWI76_RS26000 0.34 -4.0 5,374,302 + BWI76_RS26000 0.37 -3.5 5,374,312 + BWI76_RS26000 0.38 -0.2 5,374,312 + BWI76_RS26000 0.38 -3.4 5,374,315 - BWI76_RS26000 0.38 -1.6 5,374,396 + BWI76_RS26000 0.45 -4.0 5,374,418 - BWI76_RS26000 0.47 -2.4 5,374,475 - BWI76_RS26000 0.51 -2.8 5,374,649 + BWI76_RS26000 0.66 +0.1 5,374,823 - BWI76_RS26000 0.80 -4.5 5,374,970 + -3.3 5,374,978 - -1.3 5,375,294 + BWI76_RS26005 0.24 -0.2 5,375,367 - BWI76_RS26005 0.37 +0.2 5,375,781 - -0.1 5,375,781 - +0.2 5,375,850 - BWI76_RS26010 0.16 -0.2 5,375,870 - BWI76_RS26010 0.20 +0.1 5,375,982 - BWI76_RS26010 0.38 -0.2 5,376,018 + BWI76_RS26010 0.44 +0.5
Or see this region's nucleotide sequence