Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22815 and BWI76_RS22820 are separated by 40 nucleotides BWI76_RS22820 and BWI76_RS22825 are separated by 71 nucleotides
BWI76_RS22815: BWI76_RS22815 - hybrid sensor histidine kinase/response regulator, at 4,758,554 to 4,761,307
_RS22815
BWI76_RS22820: BWI76_RS22820 - glycerate kinase, at 4,761,348 to 4,762,487
_RS22820
BWI76_RS22825: BWI76_RS22825 - glucarate dehydratase, at 4,762,559 to 4,763,899
_RS22825
Position (kb)
4761
4762
4763 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4760.412 kb on - strand, within BWI76_RS22815 at 4760.606 kb on + strand, within BWI76_RS22815 at 4760.646 kb on + strand, within BWI76_RS22815 at 4761.020 kb on - strand, within BWI76_RS22815 at 4761.096 kb on - strand at 4761.103 kb on + strand at 4761.328 kb on - strand at 4761.435 kb on - strand at 4761.571 kb on + strand, within BWI76_RS22820 at 4761.781 kb on - strand, within BWI76_RS22820 at 4761.943 kb on + strand, within BWI76_RS22820 at 4761.978 kb on + strand, within BWI76_RS22820 at 4761.978 kb on + strand, within BWI76_RS22820 at 4761.986 kb on - strand, within BWI76_RS22820 at 4762.452 kb on - strand at 4762.520 kb on - strand at 4762.647 kb on - strand at 4762.663 kb on + strand at 4762.900 kb on + strand, within BWI76_RS22825 at 4762.947 kb on + strand, within BWI76_RS22825 at 4762.947 kb on + strand, within BWI76_RS22825 at 4762.947 kb on + strand, within BWI76_RS22825 at 4762.947 kb on + strand, within BWI76_RS22825 at 4762.955 kb on - strand, within BWI76_RS22825 at 4763.004 kb on - strand, within BWI76_RS22825 at 4763.005 kb on - strand at 4763.016 kb on - strand, within BWI76_RS22825 at 4763.096 kb on + strand, within BWI76_RS22825 at 4763.109 kb on - strand, within BWI76_RS22825 at 4763.109 kb on - strand, within BWI76_RS22825 at 4763.179 kb on + strand, within BWI76_RS22825
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x remove 4,760,412 - BWI76_RS22815 0.67 +0.8 4,760,606 + BWI76_RS22815 0.75 +0.6 4,760,646 + BWI76_RS22815 0.76 +0.8 4,761,020 - BWI76_RS22815 0.90 +0.7 4,761,096 - +0.6 4,761,103 + +1.1 4,761,328 - -0.8 4,761,435 - +0.2 4,761,571 + BWI76_RS22820 0.20 +0.1 4,761,781 - BWI76_RS22820 0.38 -0.1 4,761,943 + BWI76_RS22820 0.52 +0.6 4,761,978 + BWI76_RS22820 0.55 +0.5 4,761,978 + BWI76_RS22820 0.55 +2.1 4,761,986 - BWI76_RS22820 0.56 -0.5 4,762,452 - -0.1 4,762,520 - +0.3 4,762,647 - -1.1 4,762,663 + +0.9 4,762,900 + BWI76_RS22825 0.25 +0.9 4,762,947 + BWI76_RS22825 0.29 +0.0 4,762,947 + BWI76_RS22825 0.29 -1.4 4,762,947 + BWI76_RS22825 0.29 +0.6 4,762,947 + BWI76_RS22825 0.29 +1.1 4,762,955 - BWI76_RS22825 0.30 -0.5 4,763,004 - BWI76_RS22825 0.33 +0.2 4,763,005 - +0.2 4,763,016 - BWI76_RS22825 0.34 -0.2 4,763,096 + BWI76_RS22825 0.40 +0.3 4,763,109 - BWI76_RS22825 0.41 +0.4 4,763,109 - BWI76_RS22825 0.41 -2.0 4,763,179 + BWI76_RS22825 0.46 -2.7
Or see this region's nucleotide sequence